Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3S61_RS07835 Genome accession   NZ_CP047865
Coordinates   1539135..1539704 (-) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain UP_844     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534135..1544704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S61_RS07790 (E3S61_07790) - 1534609..1535217 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  E3S61_RS07795 (E3S61_07795) rplL 1535392..1535760 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3S61_RS07800 (E3S61_07800) rplJ 1535803..1536303 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3S61_RS07810 (E3S61_07810) rplA 1536575..1537267 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3S61_RS07815 (E3S61_07815) rplK 1537475..1537897 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3S61_RS07820 (E3S61_07820) nusG 1538078..1538626 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3S61_RS07825 (E3S61_07825) secE 1538639..1538821 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3S61_RS07830 (E3S61_07830) rpmG 1538877..1539020 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3S61_RS07835 (E3S61_07835) sigH 1539135..1539704 (-) 570 WP_000872882.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3S61_RS07840 (E3S61_07840) - 1539785..1540309 (-) 525 WP_000664737.1 NYN domain-containing protein -
  E3S61_RS07845 (E3S61_07845) rlmB 1540309..1541055 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3S61_RS07850 (E3S61_07850) - 1541063..1541467 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3S61_RS07855 (E3S61_07855) cysS 1541460..1542860 (-) 1401 WP_000631969.1 cysteine--tRNA ligase -
  E3S61_RS07860 (E3S61_07860) cysE 1542844..1543491 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=418117 E3S61_RS07835 WP_000872882.1 1539135..1539704(-) (sigH) [Staphylococcus aureus strain UP_844]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=418117 E3S61_RS07835 WP_000872882.1 1539135..1539704(-) (sigH) [Staphylococcus aureus strain UP_844]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment