Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3S80_RS07680 Genome accession   NZ_CP047847
Coordinates   1500979..1501548 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_522     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1495979..1506548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S80_RS07635 (E3S80_07635) - 1496453..1497061 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  E3S80_RS07640 (E3S80_07640) rplL 1497236..1497604 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3S80_RS07645 (E3S80_07645) rplJ 1497647..1498147 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  E3S80_RS07655 (E3S80_07655) rplA 1498419..1499111 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3S80_RS07660 (E3S80_07660) rplK 1499319..1499741 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3S80_RS07665 (E3S80_07665) nusG 1499922..1500470 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3S80_RS07670 (E3S80_07670) secE 1500483..1500665 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3S80_RS07675 (E3S80_07675) rpmG 1500721..1500864 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3S80_RS07680 (E3S80_07680) sigH 1500979..1501548 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3S80_RS07685 (E3S80_07685) - 1501629..1502153 (-) 525 WP_000664738.1 NYN domain-containing protein -
  E3S80_RS07690 (E3S80_07690) rlmB 1502153..1502899 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3S80_RS07695 (E3S80_07695) - 1502907..1503311 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3S80_RS07700 (E3S80_07700) cysS 1503304..1504704 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  E3S80_RS07705 (E3S80_07705) cysE 1504688..1505335 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=417733 E3S80_RS07680 WP_000872876.1 1500979..1501548(-) (sigH) [Staphylococcus aureus strain UP_522]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=417733 E3S80_RS07680 WP_000872876.1 1500979..1501548(-) (sigH) [Staphylococcus aureus strain UP_522]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment