Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3S80_RS02465 Genome accession   NZ_CP047847
Coordinates   441645..442331 (+) Length   228 a.a.
NCBI ID   WP_078104170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_522     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436645..447331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S80_RS02430 (E3S80_02430) yqeH 437172..438272 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  E3S80_RS02435 (E3S80_02435) aroE 438286..439092 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  E3S80_RS02440 (E3S80_02440) yhbY 439096..439386 (+) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  E3S80_RS02445 (E3S80_02445) nadD 439389..439958 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3S80_RS02450 (E3S80_02450) yqeK 439948..440532 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3S80_RS02455 (E3S80_02455) rsfS 440533..440886 (+) 354 WP_001088020.1 ribosome silencing factor -
  E3S80_RS02460 (E3S80_02460) - 440889..441605 (+) 717 WP_000084822.1 class I SAM-dependent DNA methyltransferase -
  E3S80_RS02465 (E3S80_02465) comEA 441645..442331 (+) 687 WP_078104170.1 ComEA family DNA-binding protein Machinery gene
  E3S80_RS02470 (E3S80_02470) - 442423..442884 (+) 462 WP_000439693.1 ComE operon protein 2 -
  E3S80_RS02475 (E3S80_02475) comEC 442889..445090 (+) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3S80_RS02480 (E3S80_02480) holA 445147..446121 (+) 975 WP_001282563.1 DNA polymerase III subunit delta -
  E3S80_RS02485 (E3S80_02485) rpsT 446166..446417 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25875.55 Da        Isoelectric Point: 9.3305

>NTDB_id=417713 E3S80_RS02465 WP_078104170.1 441645..442331(+) (comEA) [Staphylococcus aureus strain UP_522]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNINNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=417713 E3S80_RS02465 WP_078104170.1 441645..442331(+) (comEA) [Staphylococcus aureus strain UP_522]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGGCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACATAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment