Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E3S83_RS06085 Genome accession   NZ_CP047843
Coordinates   1237246..1238118 (+) Length   290 a.a.
NCBI ID   WP_160175797.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_620     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1232246..1243118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S83_RS06065 (E3S83_06065) sucC 1232360..1233526 (+) 1167 WP_001020808.1 ADP-forming succinate--CoA ligase subunit beta -
  E3S83_RS06070 (E3S83_06070) sucD 1233548..1234456 (+) 909 WP_000110254.1 succinate--CoA ligase subunit alpha -
  E3S83_RS06075 (E3S83_06075) - 1234683..1235801 (+) 1119 WP_001041666.1 LysM peptidoglycan-binding domain-containing protein -
  E3S83_RS06080 (E3S83_06080) fmhC 1235829..1237073 (+) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  E3S83_RS06085 (E3S83_06085) dprA 1237246..1238118 (+) 873 WP_160175797.1 DNA-processing protein DprA Machinery gene
  E3S83_RS06090 (E3S83_06090) topA 1238292..1240367 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  E3S83_RS06095 (E3S83_06095) trmFO 1240523..1241830 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33599.02 Da        Isoelectric Point: 9.5094

>NTDB_id=417633 E3S83_RS06085 WP_160175797.1 1237246..1238118(+) (dprA) [Staphylococcus aureus strain UP_620]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTMSVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=417633 E3S83_RS06085 WP_160175797.1 1237246..1238118(+) (dprA) [Staphylococcus aureus strain UP_620]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATGTCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA Staphylococcus aureus N315

98.966

100

0.99

Multiple sequence alignment