Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3S84_RS05360 Genome accession   NZ_CP047841
Coordinates   1060441..1061427 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_644     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1055441..1066427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S84_RS05335 (E3S84_05335) - 1055701..1056048 (-) 348 WP_001242102.1 hypothetical protein -
  E3S84_RS05340 (E3S84_05340) - 1056234..1056827 (+) 594 WP_000224611.1 CYTH domain-containing protein -
  E3S84_RS05345 (E3S84_05345) - 1056931..1057296 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  E3S84_RS05350 (E3S84_05350) yjbH 1057319..1058125 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  E3S84_RS05355 (E3S84_05355) pepF 1058585..1060393 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  E3S84_RS05360 (E3S84_05360) coiA 1060441..1061427 (-) 987 WP_000959292.1 competence protein CoiA Machinery gene
  E3S84_RS05365 (E3S84_05365) mecA 1061548..1062267 (-) 720 WP_001217723.1 adaptor protein MecA -
  E3S84_RS05370 (E3S84_05370) spxA 1062638..1063033 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3S84_RS05375 (E3S84_05375) trpS 1063328..1064317 (+) 990 WP_031837887.1 tryptophan--tRNA ligase -
  E3S84_RS05380 (E3S84_05380) opp4C 1064359..1065240 (-) 882 WP_047928210.1 oligopeptide ABC transporter permease -
  E3S84_RS05385 (E3S84_05385) opp4B 1065252..1066214 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=417601 E3S84_RS05360 WP_000959292.1 1060441..1061427(-) (coiA) [Staphylococcus aureus strain UP_644]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=417601 E3S84_RS05360 WP_000959292.1 1060441..1061427(-) (coiA) [Staphylococcus aureus strain UP_644]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment