Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3S84_RS02120 Genome accession   NZ_CP047841
Coordinates   398507..399193 (+) Length   228 a.a.
NCBI ID   WP_078104170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_644     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393507..404193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S84_RS02085 (E3S84_02085) yqeH 394034..395134 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  E3S84_RS02090 (E3S84_02090) aroE 395148..395954 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  E3S84_RS02095 (E3S84_02095) yhbY 395958..396248 (+) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  E3S84_RS02100 (E3S84_02100) nadD 396251..396820 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3S84_RS02105 (E3S84_02105) yqeK 396810..397394 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3S84_RS02110 (E3S84_02110) rsfS 397395..397748 (+) 354 WP_001088020.1 ribosome silencing factor -
  E3S84_RS02115 (E3S84_02115) - 397751..398467 (+) 717 WP_000084822.1 class I SAM-dependent DNA methyltransferase -
  E3S84_RS02120 (E3S84_02120) comEA 398507..399193 (+) 687 WP_078104170.1 ComEA family DNA-binding protein Machinery gene
  E3S84_RS02125 (E3S84_02125) - 399285..399746 (+) 462 WP_000439693.1 ComE operon protein 2 -
  E3S84_RS02130 (E3S84_02130) comEC 399751..401952 (+) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3S84_RS02135 (E3S84_02135) holA 402009..402983 (+) 975 WP_001282563.1 DNA polymerase III subunit delta -
  E3S84_RS02140 (E3S84_02140) rpsT 403028..403279 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25875.55 Da        Isoelectric Point: 9.3305

>NTDB_id=417586 E3S84_RS02120 WP_078104170.1 398507..399193(+) (comEA) [Staphylococcus aureus strain UP_644]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNINNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=417586 E3S84_RS02120 WP_078104170.1 398507..399193(+) (comEA) [Staphylococcus aureus strain UP_644]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACATAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment