Detailed information NTG0041756

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ECDH1ME8569_RS20250
• Genome accession: NC_017638
• Coordinates: 4102536..4103561 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli DH1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4097536..4108561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECDH1ME8569_RS20220 (ECDH1ME8569_3797)	zapB	4097620..4097865 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
ECDH1ME8569_RS20225 (ECDH1ME8569_3798)	rraA	4097950..4098435 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ECDH1ME8569_RS20230 (ECDH1ME8569_3799)	menA	4098528..4099454 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ECDH1ME8569_RS20235 (ECDH1ME8569_3800)	hslU	4099521..4100852 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ECDH1ME8569_RS20240 (ECDH1ME8569_3801)	hslV	4100862..4101392 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ECDH1ME8569_RS20245 (ECDH1ME8569_3802)	ftsN	4101485..4102444 (-)	960	WP_000068828.1	cell division protein FtsN	-
ECDH1ME8569_RS20250 (ECDH1ME8569_3803)	cytR	4102536..4103561 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ECDH1ME8569_RS20255 (ECDH1ME8569_3804)	priA	4103717..4105915 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
ECDH1ME8569_RS20260 (ECDH1ME8569_3805)	rpmE	4106118..4106330 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
ECDH1ME8569_RS20265 (ECDH1ME8569_3806)	yiiX	4106391..4106999 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
ECDH1ME8569_RS20270 (ECDH1ME8569_3807)	metJ	4107183..4107500 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=41756 ECDH1ME8569_RS20250 WP_000644904.1 4102536..4103561(-) (cytR) [Escherichia coli DH1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=41756 ECDH1ME8569_RS20250 WP_000644904.1 4102536..4103561(-) (cytR) [Escherichia coli DH1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628