Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSTAB_RS17930 Genome accession   NC_015740
Coordinates   3883357..3884949 (+) Length   530 a.a.
NCBI ID   WP_013984075.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3878357..3889949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSTAB_RS17910 (PSTAB_3607) pgeF 3880110..3880847 (-) 738 WP_013984072.1 peptidoglycan editing factor PgeF -
  PSTAB_RS17915 (PSTAB_3608) rluD 3880844..3881818 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSTAB_RS17920 (PSTAB_3609) - 3882023..3883012 (+) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  PSTAB_RS17925 (PSTAB_3610) - 3883134..3883367 (+) 234 WP_013984074.1 PP0621 family protein -
  PSTAB_RS17930 (PSTAB_3611) pilS 3883357..3884949 (+) 1593 WP_013984075.1 sensor histidine kinase Regulator
  PSTAB_RS17935 (PSTAB_3612) pilR 3885080..3886417 (+) 1338 WP_041772001.1 sigma-54-dependent transcriptional regulator Regulator
  PSTAB_RS17940 (PSTAB_3613) - 3886461..3887519 (-) 1059 WP_011914666.1 DUF2333 family protein -
  PSTAB_RS17945 (PSTAB_3614) - 3887737..3889332 (+) 1596 WP_013984077.1 response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58892.95 Da        Isoelectric Point: 7.8561

>NTDB_id=41756 PSTAB_RS17930 WP_013984075.1 3883357..3884949(+) (pilS) [Stutzerimonas stutzeri]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIIVAVLVQSPERDLPVL
SLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRSEASSQYVQAGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLAGERLA
PRCPELLKALQHWRGNPTLRPPNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=41756 PSTAB_RS17930 WP_013984075.1 3883357..3884949(+) (pilS) [Stutzerimonas stutzeri]
GTGGGCACTGAGAACCTCACCTTCTTCGGCGACCAGGGGCGGCGCATCCTTCGCCTGTATCACCTCTACCGCCTGACCAT
TGGCCTCGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGATCTGCTGCAGATGAGCAATCCGCAGCTGTTTCAGT
ACGGCGCCTGGCTCTATCTGATCCTCAACATCATCGTCGCGGTGCTGGTGCAGAGCCCCGAGCGCGACCTGCCAGTGCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGATTGTTCTATTTTGGCGGAGGAACGCCGAGCGGCATCGGCAACCT
GCTGATCGTCGCCGTCGCCATCGCCAATATTCTCCTGCGGGGGCGGGTCGGTTTCTTCATCGCCGCGGTCGCTGCCACCG
GCCTGATCTACCTGACCTTCTACCTGAGCATCAGTCGTTCCGAAGCCAGCAGCCAGTACGTCCAGGCCGGTGCGCTCGGC
ACGCTGTGCTTCGCCGCAGCCTTTCTCGTCCAGGGACTGACTCGGCGCCTGCAGGTCAGCGAGACTCTGGCCCGCCAGCG
CGCCGAGGAGGTCGCCAACCTCGAGGCCCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTGTTGGACC
CGCAGGAGCGCGTGCTCCTGGCCAACCAGGGAGCGCTGCAGTTGCTCGGCCAGGAATCGCTGGCCGGCGAGCGCCTCGCA
CCGCGCTGCCCGGAGCTGCTCAAGGCACTGCAGCACTGGCGTGGCAATCCCACACTGCGCCCGCCGAACCTCAAGGCCAC
CCCCGGCGGACCGACGCTACAGCCGAGTTTCGCCGCCCTGCAGCACGGCAACAAGCTCGACACTCTGGTGTTCCTCGAGG
ACATCTCGCAGATCGCCCAGAAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGACGACTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCATGCTGCTCAGCTGCTACAGGAATCCGAAGAGCTGGACGGCCCGGATCGGCG
ACTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAATCTGGTCATCGAGAACGTGCTGCAGCTTTCCCGGCGCCGCC
AGGCGGAGCCCCAGCTGCTGGATCTCAAATACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCCAGGGGCTCAGCCCGCAG
CAGACGGTTCACCTGGAAACCATCGGCAGCTCGCTGCAGACGCGCATGGACCCCAACCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGGAGCACGATCGCGCTCAGGTCTGGCTCCGCCTGTTTCGCGACGAAG
CCAGCGATCTGCCGGTCGTTGAGGTCCTCGACGATGGGCCCGGCATCGCCGCCGAGCAGTTGCACAACGTTTTCGAACCC
TTCTTCACCACCGAGAGTAAAGGCACCGGGCTCGGGCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCGCCGAAGGCGGCAGCTGCTTCCGCATCGTCTTCGCGCACCCGCGCAAGCTGAGCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666

Multiple sequence alignment