Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3S85_RS02130 Genome accession   NZ_CP047839
Coordinates   400528..401214 (+) Length   228 a.a.
NCBI ID   WP_078104310.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_678     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395528..406214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S85_RS02095 (E3S85_02095) yqeH 396055..397155 (+) 1101 WP_001280132.1 ribosome biogenesis GTPase YqeH -
  E3S85_RS02100 (E3S85_02100) aroE 397169..397975 (+) 807 WP_000666750.1 shikimate dehydrogenase -
  E3S85_RS02105 (E3S85_02105) yhbY 397979..398269 (+) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  E3S85_RS02110 (E3S85_02110) nadD 398272..398841 (+) 570 WP_000822938.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3S85_RS02115 (E3S85_02115) yqeK 398831..399415 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3S85_RS02120 (E3S85_02120) rsfS 399416..399769 (+) 354 WP_160175978.1 ribosome silencing factor -
  E3S85_RS02125 (E3S85_02125) - 399772..400488 (+) 717 WP_000084835.1 class I SAM-dependent DNA methyltransferase -
  E3S85_RS02130 (E3S85_02130) comEA 400528..401214 (+) 687 WP_078104310.1 ComEA family DNA-binding protein Machinery gene
  E3S85_RS02135 (E3S85_02135) - 401306..401767 (+) 462 WP_000439692.1 ComE operon protein 2 -
  E3S85_RS02140 (E3S85_02140) comEC 401772..403973 (+) 2202 WP_000967506.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3S85_RS02145 (E3S85_02145) holA 404030..405004 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  E3S85_RS02150 (E3S85_02150) rpsT 405049..405300 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25766.38 Da        Isoelectric Point: 9.3383

>NTDB_id=417544 E3S85_RS02130 WP_078104310.1 400528..401214(+) (comEA) [Staphylococcus aureus strain UP_678]
MVLLYQFLLRYKDFLAQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTVLKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDLKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLNSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=417544 E3S85_RS02130 WP_078104310.1 400528..401214(+) (comEA) [Staphylococcus aureus strain UP_678]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAGCTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
TTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATTTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAATTCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

95.595

99.561

0.952
  comEA Staphylococcus aureus N315

95.595

99.561

0.952

Multiple sequence alignment