Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   E3S91_RS02505 Genome accession   NZ_CP047835
Coordinates   463709..464206 (+) Length   165 a.a.
NCBI ID   WP_029694076.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_883     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458709..469206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S91_RS02465 (E3S91_02465) - 458753..459739 (+) 987 WP_000161315.1 ROK family glucokinase -
  E3S91_RS02470 (E3S91_02470) - 459739..460068 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S91_RS02475 (E3S91_02475) - 460065..460688 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3S91_RS02480 (E3S91_02480) comGA 460740..461714 (+) 975 WP_160193046.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S91_RS02485 (E3S91_02485) comGB 461686..462756 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S91_RS02490 (E3S91_02490) comGC 462770..463081 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S91_RS02495 (E3S91_02495) comGD 463059..463505 (+) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S91_RS02500 (E3S91_02500) comGE 463492..463791 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3S91_RS02505 (E3S91_02505) comGF 463709..464206 (+) 498 WP_029694076.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S91_RS02510 (E3S91_02510) - 464303..464449 (+) 147 WP_001789879.1 hypothetical protein -
  E3S91_RS02515 (E3S91_02515) - 464439..464963 (+) 525 WP_001015121.1 shikimate kinase -
  E3S91_RS02520 (E3S91_02520) gcvT 465122..466213 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S91_RS02525 (E3S91_02525) gcvPA 466233..467579 (+) 1347 WP_000019678.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E3S91_RS02530 (E3S91_02530) gcvPB 467572..469044 (+) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2877

>NTDB_id=417468 E3S91_RS02505 WP_029694076.1 463709..464206(+) (comGF) [Staphylococcus aureus strain UP_883]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIFV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=417468 E3S91_RS02505 WP_029694076.1 463709..464206(+) (comGF) [Staphylococcus aureus strain UP_883]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTTTGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.364

100

0.964
  comGF Staphylococcus aureus N315

96.364

100

0.964

Multiple sequence alignment