Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S96_RS02275 Genome accession   NZ_CP047828
Coordinates   426021..426467 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1073     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421021..431467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S96_RS02240 (E3S96_02240) - 421515..421718 (+) 204 WP_000087561.1 YqgQ family protein -
  E3S96_RS02245 (E3S96_02245) - 421715..422701 (+) 987 WP_000161307.1 ROK family glucokinase -
  E3S96_RS02250 (E3S96_02250) - 422701..423030 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S96_RS02255 (E3S96_02255) - 423027..423650 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  E3S96_RS02260 (E3S96_02260) comGA 423702..424676 (+) 975 WP_160190527.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S96_RS02265 (E3S96_02265) comGB 424648..425718 (+) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S96_RS02270 (E3S96_02270) comGC 425732..426043 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S96_RS02275 (E3S96_02275) comGD 426021..426467 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S96_RS02280 (E3S96_02280) comGE 426454..426753 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3S96_RS02285 (E3S96_02285) comGF 426671..427168 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S96_RS02290 (E3S96_02290) - 427265..427411 (+) 147 WP_001789879.1 hypothetical protein -
  E3S96_RS02295 (E3S96_02295) - 427401..427925 (+) 525 WP_033858309.1 shikimate kinase -
  E3S96_RS02300 (E3S96_02300) gcvT 428084..429175 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S96_RS02305 (E3S96_02305) gcvPA 429195..430541 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=417342 E3S96_RS02275 WP_001796473.1 426021..426467(+) (comGD) [Staphylococcus aureus strain UP_1073]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=417342 E3S96_RS02275 WP_001796473.1 426021..426467(+) (comGD) [Staphylococcus aureus strain UP_1073]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment