Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3T01_RS07215 Genome accession   NZ_CP047826
Coordinates   1457399..1457968 (-) Length   189 a.a.
NCBI ID   WP_000872883.1    Uniprot ID   A0AAN1ZPK7
Organism   Staphylococcus aureus strain UP_1239     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1452399..1462968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T01_RS07170 (E3T01_07170) - 1452873..1453481 (-) 609 WP_000020303.1 class I SAM-dependent methyltransferase -
  E3T01_RS07175 (E3T01_07175) rplL 1453656..1454024 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3T01_RS07180 (E3T01_07180) rplJ 1454067..1454567 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3T01_RS07190 (E3T01_07190) rplA 1454839..1455531 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3T01_RS07195 (E3T01_07195) rplK 1455739..1456161 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3T01_RS07200 (E3T01_07200) nusG 1456342..1456890 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3T01_RS07205 (E3T01_07205) secE 1456903..1457085 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3T01_RS07210 (E3T01_07210) rpmG 1457141..1457284 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3T01_RS07215 (E3T01_07215) sigH 1457399..1457968 (-) 570 WP_000872883.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3T01_RS07220 (E3T01_07220) - 1458049..1458573 (-) 525 WP_000664732.1 NYN domain-containing protein -
  E3T01_RS07225 (E3T01_07225) rlmB 1458573..1459319 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3T01_RS07230 (E3T01_07230) - 1459327..1459731 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3T01_RS07235 (E3T01_07235) cysS 1459724..1461124 (-) 1401 WP_000631962.1 cysteine--tRNA ligase -
  E3T01_RS07240 (E3T01_07240) cysE 1461108..1461755 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23070.93 Da        Isoelectric Point: 9.6015

>NTDB_id=417314 E3T01_RS07215 WP_000872883.1 1457399..1457968(-) (sigH) [Staphylococcus aureus strain UP_1239]
MKYDLTTQDSTIKRSNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=417314 E3T01_RS07215 WP_000872883.1 1457399..1457968(-) (sigH) [Staphylococcus aureus strain UP_1239]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAGCAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment