Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3T01_RS05270 Genome accession   NZ_CP047826
Coordinates   1060628..1061614 (-) Length   328 a.a.
NCBI ID   WP_000959285.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1055628..1066614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T01_RS05245 (E3T01_05245) - 1055888..1056235 (-) 348 WP_001242102.1 hypothetical protein -
  E3T01_RS05250 (E3T01_05250) - 1056421..1057014 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  E3T01_RS05255 (E3T01_05255) - 1057118..1057483 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  E3T01_RS05260 (E3T01_05260) yjbH 1057506..1058312 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  E3T01_RS05265 (E3T01_05265) pepF 1058772..1060580 (-) 1809 WP_000082731.1 oligoendopeptidase F -
  E3T01_RS05270 (E3T01_05270) coiA 1060628..1061614 (-) 987 WP_000959285.1 competence protein CoiA Machinery gene
  E3T01_RS05275 (E3T01_05275) mecA 1061735..1062454 (-) 720 WP_001217728.1 adaptor protein MecA -
  E3T01_RS05280 (E3T01_05280) spxA 1062825..1063220 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3T01_RS05285 (E3T01_05285) trpS 1063515..1064504 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  E3T01_RS05290 (E3T01_05290) opp4C 1064546..1065427 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  E3T01_RS05295 (E3T01_05295) opp4B 1065439..1066401 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38811.37 Da        Isoelectric Point: 9.5840

>NTDB_id=417309 E3T01_RS05270 WP_000959285.1 1060628..1061614(-) (coiA) [Staphylococcus aureus strain UP_1239]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQTMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=417309 E3T01_RS05270 WP_000959285.1 1060628..1061614(-) (coiA) [Staphylococcus aureus strain UP_1239]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAACAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.171

100

0.982
  coiA Staphylococcus aureus N315

98.171

100

0.982

Multiple sequence alignment