Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3T05_RS07295 Genome accession   NZ_CP047820
Coordinates   1468400..1468969 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1395     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463400..1473969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T05_RS07250 - 1463874..1464482 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  E3T05_RS07255 rplL 1464657..1465025 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3T05_RS07260 rplJ 1465068..1465568 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3T05_RS07270 rplA 1465840..1466532 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3T05_RS07275 rplK 1466740..1467162 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3T05_RS07280 nusG 1467343..1467891 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3T05_RS07285 secE 1467904..1468086 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  E3T05_RS07290 rpmG 1468142..1468285 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3T05_RS07295 sigH 1468400..1468969 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3T05_RS07300 - 1469050..1469574 (-) 525 WP_000664738.1 NYN domain-containing protein -
  E3T05_RS07305 rlmB 1469574..1470320 (-) 747 WP_015581794.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3T05_RS07310 - 1470328..1470732 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3T05_RS07315 cysS 1470725..1472125 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  E3T05_RS07320 cysE 1472109..1472756 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=417231 E3T05_RS07295 WP_000872873.1 1468400..1468969(-) (sigH) [Staphylococcus aureus strain UP_1395]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=417231 E3T05_RS07295 WP_000872873.1 1468400..1468969(-) (sigH) [Staphylococcus aureus strain UP_1395]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment