Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3T05_RS02175 Genome accession   NZ_CP047820
Coordinates   408568..409254 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain UP_1395     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403568..414254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T05_RS02140 yqeH 404095..405195 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  E3T05_RS02145 aroE 405209..406015 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  E3T05_RS02150 yhbY 406019..406309 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  E3T05_RS02155 nadD 406312..406881 (+) 570 WP_015581862.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3T05_RS02160 yqeK 406871..407455 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3T05_RS02165 rsfS 407456..407809 (+) 354 WP_001088022.1 ribosome silencing factor -
  E3T05_RS02170 - 407812..408528 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  E3T05_RS02175 comEA 408568..409254 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  E3T05_RS02180 - 409346..409807 (+) 462 WP_000439693.1 ComE operon protein 2 -
  E3T05_RS02185 comEC 409812..412013 (+) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3T05_RS02190 holA 412070..413044 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  E3T05_RS02195 rpsT 413089..413340 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=417212 E3T05_RS02175 WP_001792568.1 408568..409254(+) (comEA) [Staphylococcus aureus strain UP_1395]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=417212 E3T05_RS02175 WP_001792568.1 408568..409254(+) (comEA) [Staphylococcus aureus strain UP_1395]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACGAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment