Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3T08_RS10070 Genome accession   NZ_CP047815
Coordinates   2067171..2067566 (-) Length   131 a.a.
NCBI ID   WP_160188390.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1484     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2062171..2072566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T08_RS10045 (E3T08_10045) thiE 2062577..2063218 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  E3T08_RS10050 (E3T08_10050) thiM 2063220..2064011 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  E3T08_RS10055 (E3T08_10055) thiD 2063995..2064825 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E3T08_RS10060 (E3T08_10060) tenA 2064818..2065507 (-) 690 WP_000396079.1 thiaminase II -
  E3T08_RS10065 (E3T08_10065) sceD 2066087..2066782 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  E3T08_RS10070 (E3T08_10070) ssb 2067171..2067566 (-) 396 WP_160188390.1 single-stranded DNA-binding protein Machinery gene
  E3T08_RS10075 (E3T08_10075) - 2067760..2068200 (+) 441 WP_000846746.1 YwpF-like family protein -
  E3T08_RS10080 (E3T08_10080) fabZ 2068259..2068699 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E3T08_RS10085 (E3T08_10085) murA 2068733..2069998 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E3T08_RS10090 (E3T08_10090) - 2070109..2070342 (-) 234 WP_000384523.1 DUF1146 family protein -
  E3T08_RS10095 (E3T08_10095) - 2070474..2070566 (-) 93 WP_031835036.1 hypothetical protein -
  E3T08_RS10100 (E3T08_10100) - 2070903..2071307 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15058.14 Da        Isoelectric Point: 5.6824

>NTDB_id=417156 E3T08_RS10070 WP_160188390.1 2067171..2067566(-) (ssb) [Staphylococcus aureus strain UP_1484]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSLKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=417156 E3T08_RS10070 WP_160188390.1 2067171..2067566(-) (ssb) [Staphylococcus aureus strain UP_1484]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCTTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment