Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3T08_RS07640 Genome accession   NZ_CP047815
Coordinates   1605491..1606177 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1484     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1600491..1611177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T08_RS07620 (E3T08_07620) rpsT 1601405..1601656 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  E3T08_RS07625 (E3T08_07625) holA 1601701..1602675 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  E3T08_RS07630 (E3T08_07630) comEC 1602732..1604933 (-) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3T08_RS07635 (E3T08_07635) - 1604938..1605399 (-) 462 WP_000439693.1 ComE operon protein 2 -
  E3T08_RS07640 (E3T08_07640) comEA 1605491..1606177 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  E3T08_RS07645 (E3T08_07645) - 1606217..1606933 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  E3T08_RS07650 (E3T08_07650) rsfS 1606936..1607289 (-) 354 WP_001088020.1 ribosome silencing factor -
  E3T08_RS07655 (E3T08_07655) yqeK 1607290..1607874 (-) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3T08_RS07660 (E3T08_07660) nadD 1607864..1608433 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3T08_RS07665 (E3T08_07665) yhbY 1608436..1608726 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  E3T08_RS07670 (E3T08_07670) aroE 1608730..1609536 (-) 807 WP_000666744.1 shikimate dehydrogenase -
  E3T08_RS07675 (E3T08_07675) yqeH 1609550..1610650 (-) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=417145 E3T08_RS07640 WP_001788928.1 1605491..1606177(-) (comEA) [Staphylococcus aureus strain UP_1484]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=417145 E3T08_RS07640 WP_001788928.1 1605491..1606177(-) (comEA) [Staphylococcus aureus strain UP_1484]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment