Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3T09_RS07170 Genome accession   NZ_CP047813
Coordinates   1447013..1447582 (-) Length   189 a.a.
NCBI ID   WP_043044723.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1500     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442013..1452582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T09_RS07125 (E3T09_07125) - 1442487..1443095 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  E3T09_RS07130 (E3T09_07130) rplL 1443270..1443638 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3T09_RS07135 (E3T09_07135) rplJ 1443681..1444181 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3T09_RS07145 (E3T09_07145) rplA 1444453..1445145 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3T09_RS07150 (E3T09_07150) rplK 1445353..1445775 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3T09_RS07155 (E3T09_07155) nusG 1445956..1446504 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3T09_RS07160 (E3T09_07160) secE 1446517..1446699 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3T09_RS07165 (E3T09_07165) rpmG 1446755..1446898 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3T09_RS07170 (E3T09_07170) sigH 1447013..1447582 (-) 570 WP_043044723.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3T09_RS07175 (E3T09_07175) - 1447663..1448187 (-) 525 WP_000664732.1 NYN domain-containing protein -
  E3T09_RS07180 (E3T09_07180) rlmB 1448187..1448933 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3T09_RS07185 (E3T09_07185) - 1448941..1449345 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3T09_RS07190 (E3T09_07190) cysS 1449338..1450738 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  E3T09_RS07195 (E3T09_07195) cysE 1450722..1451369 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.89 Da        Isoelectric Point: 9.5047

>NTDB_id=417107 E3T09_RS07170 WP_043044723.1 1447013..1447582(-) (sigH) [Staphylococcus aureus strain UP_1500]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVAYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=417107 E3T09_RS07170 WP_043044723.1 1447013..1447582(-) (sigH) [Staphylococcus aureus strain UP_1500]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTGCGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment