Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3T09_RS05215 Genome accession   NZ_CP047813
Coordinates   1049395..1050381 (-) Length   328 a.a.
NCBI ID   WP_043044629.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044395..1055381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T09_RS05190 (E3T09_05190) - 1044655..1045002 (-) 348 WP_001242102.1 hypothetical protein -
  E3T09_RS05195 (E3T09_05195) - 1045188..1045781 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  E3T09_RS05200 (E3T09_05200) - 1045885..1046250 (+) 366 WP_000214068.1 truncated hemoglobin YjbI -
  E3T09_RS05205 (E3T09_05205) yjbH 1046273..1047079 (+) 807 WP_160186708.1 protease adaptor protein YjbH -
  E3T09_RS05210 (E3T09_05210) pepF 1047539..1049347 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  E3T09_RS05215 (E3T09_05215) coiA 1049395..1050381 (-) 987 WP_043044629.1 competence protein CoiA Machinery gene
  E3T09_RS05220 (E3T09_05220) mecA 1050502..1051221 (-) 720 WP_001217730.1 adaptor protein MecA -
  E3T09_RS05225 (E3T09_05225) spxA 1051592..1051987 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3T09_RS05230 (E3T09_05230) trpS 1052282..1053271 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  E3T09_RS05235 (E3T09_05235) opp4C 1053313..1054194 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  E3T09_RS05240 (E3T09_05240) opp4B 1054206..1055168 (-) 963 WP_043044630.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38794.40 Da        Isoelectric Point: 9.5881

>NTDB_id=417102 E3T09_RS05215 WP_043044629.1 1049395..1050381(-) (coiA) [Staphylococcus aureus strain UP_1500]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=417102 E3T09_RS05215 WP_043044629.1 1049395..1050381(-) (coiA) [Staphylococcus aureus strain UP_1500]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982

Multiple sequence alignment