Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LGMK_RS08090 Genome accession   NC_015734
Coordinates   1612237..1612779 (-) Length   180 a.a.
NCBI ID   WP_013103026.1    Uniprot ID   D5T2D1
Organism   Leuconostoc sp. C2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1607237..1617779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMK_RS08065 (LGMK_07960) - 1607265..1607657 (+) 393 WP_013103031.1 RidA family protein -
  LGMK_RS08070 (LGMK_07965) dnaB 1607776..1609236 (-) 1461 WP_013103030.1 replicative DNA helicase -
  LGMK_RS08075 (LGMK_07970) rplI 1609239..1609691 (-) 453 WP_013103029.1 50S ribosomal protein L9 -
  LGMK_RS08080 (LGMK_07975) - 1609738..1611768 (-) 2031 WP_013103028.1 DHH family phosphoesterase -
  LGMK_RS08085 (LGMK_07980) rpsR 1611916..1612200 (-) 285 WP_013103027.1 30S ribosomal protein S18 -
  LGMK_RS08090 (LGMK_07985) ssb 1612237..1612779 (-) 543 WP_013103026.1 single-stranded DNA-binding protein Machinery gene
  LGMK_RS08095 (LGMK_07990) rpsF 1612812..1613108 (-) 297 WP_013103025.1 30S ribosomal protein S6 -
  LGMK_RS08100 (LGMK_07995) pepV 1613300..1614745 (-) 1446 WP_013103024.1 dipeptidase PepV -
  LGMK_RS08105 (LGMK_08000) - 1614799..1615623 (-) 825 WP_013103023.1 energy-coupling factor transporter transmembrane protein EcfT -
  LGMK_RS08110 (LGMK_08005) - 1615720..1617399 (-) 1680 WP_013103022.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19529.16 Da        Isoelectric Point: 4.6689

>NTDB_id=41703 LGMK_RS08090 WP_013103026.1 1612237..1612779(-) (ssb) [Leuconostoc sp. C2]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKSAENFANFTGKGALVAIEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRSESDKRRAQNGTSDTSHNGGGFSSSSDNAFSGVDPFASASQNSNTQSTATNEAA
NPFAASGKTEIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=41703 LGMK_RS08090 WP_013103026.1 1612237..1612779(-) (ssb) [Leuconostoc sp. C2]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGATGTGGAATTACGCTATACACAATCGGGTACAGCGGTCGG
CACGTTTAGTTTGGCGGTTAACCGTCAGTTTACCAATCAGGCTGGTGAACGTGAGGCTGATTTTATTAACGCTGTTATTT
GGCGTAAGTCAGCTGAAAATTTTGCTAATTTTACTGGAAAAGGCGCATTAGTTGCCATTGAAGGGCGATTGCAAACACGT
AATTATGAAAACAACCAAGGACAACGTGTTTATGTGACTGAGGTTGTTGTTGATAATTTTTCACTGCTTGAGTCACGTTC
CGAAAGTGATAAGCGACGTGCCCAAAACGGGACGTCTGACACATCACATAACGGTGGCGGCTTCAGTTCGTCAAGTGACA
ATGCATTTAGTGGTGTTGATCCATTTGCTAGTGCGAGTCAAAATTCAAACACGCAATCAACTGCAACAAATGAAGCGGCT
AATCCATTTGCGGCTAGCGGCAAAACTGAAATTGATATATCAGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5T2D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.444

100

0.644
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.667

100

0.517

Multiple sequence alignment