Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3T15_RS07040 Genome accession   NZ_CP047807
Coordinates   1410732..1411301 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1612     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405732..1416301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T15_RS06995 (E3T15_06995) - 1406206..1406814 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  E3T15_RS07000 (E3T15_07000) rplL 1406989..1407357 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3T15_RS07005 (E3T15_07005) rplJ 1407400..1407900 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  E3T15_RS07015 (E3T15_07015) rplA 1408172..1408864 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3T15_RS07020 (E3T15_07020) rplK 1409072..1409494 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3T15_RS07025 (E3T15_07025) nusG 1409675..1410223 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3T15_RS07030 (E3T15_07030) secE 1410236..1410418 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3T15_RS07035 (E3T15_07035) rpmG 1410474..1410617 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3T15_RS07040 (E3T15_07040) sigH 1410732..1411301 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3T15_RS07045 (E3T15_07045) - 1411382..1411906 (-) 525 WP_000664738.1 NYN domain-containing protein -
  E3T15_RS07050 (E3T15_07050) rlmB 1411906..1412652 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3T15_RS07055 (E3T15_07055) - 1412660..1413064 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3T15_RS07060 (E3T15_07060) cysS 1413057..1414457 (-) 1401 WP_098691770.1 cysteine--tRNA ligase -
  E3T15_RS07065 (E3T15_07065) cysE 1414441..1415088 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=416981 E3T15_RS07040 WP_000872876.1 1410732..1411301(-) (sigH) [Staphylococcus aureus strain UP_1612]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=416981 E3T15_RS07040 WP_000872876.1 1410732..1411301(-) (sigH) [Staphylococcus aureus strain UP_1612]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment