Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3S62_RS13330 Genome accession   NZ_CP047803
Coordinates   2700169..2700564 (+) Length   131 a.a.
NCBI ID   WP_160199836.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1097     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2695169..2705564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S62_RS13300 (E3S62_13300) - 2696395..2696799 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  E3S62_RS13310 (E3S62_13310) - 2697396..2697629 (+) 234 WP_160199835.1 DUF1146 family protein -
  E3S62_RS13315 (E3S62_13315) murA 2697740..2699005 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E3S62_RS13320 (E3S62_13320) fabZ 2699039..2699479 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E3S62_RS13325 (E3S62_13325) - 2699535..2699975 (-) 441 WP_000846751.1 YwpF-like family protein -
  E3S62_RS13330 (E3S62_13330) ssb 2700169..2700564 (+) 396 WP_160199836.1 single-stranded DNA-binding protein Machinery gene
  E3S62_RS13335 (E3S62_13335) sceD 2700953..2701648 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  E3S62_RS13340 (E3S62_13340) tenA 2702036..2702725 (+) 690 WP_000396063.1 thiaminase II -
  E3S62_RS13345 (E3S62_13345) thiD 2702718..2703548 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E3S62_RS13350 (E3S62_13350) thiM 2703532..2704323 (+) 792 WP_160199837.1 hydroxyethylthiazole kinase -
  E3S62_RS13355 (E3S62_13355) thiE 2704325..2704966 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15027.08 Da        Isoelectric Point: 5.2214

>NTDB_id=416863 E3S62_RS13330 WP_160199836.1 2700169..2700564(+) (ssb) [Staphylococcus aureus strain UP_1097]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCIAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=416863 E3S62_RS13330 WP_160199836.1 2700169..2700564(+) (ssb) [Staphylococcus aureus strain UP_1097]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTATAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment