Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E3S77_RS04170 Genome accession   NZ_CP047797
Coordinates   841293..842165 (-) Length   290 a.a.
NCBI ID   WP_047213389.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_426     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 836293..847165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S77_RS04160 (E3S77_04160) trmFO 837581..838888 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  E3S77_RS04165 (E3S77_04165) topA 839044..841119 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  E3S77_RS04170 (E3S77_04170) dprA 841293..842165 (-) 873 WP_047213389.1 DNA-processing protein DprA Machinery gene
  E3S77_RS04175 (E3S77_04175) fmhC 842337..843581 (-) 1245 WP_000672857.1 FemA/FemB family glycyltransferase FmhC -
  E3S77_RS04180 (E3S77_04180) - 843609..843761 (-) 153 Protein_797 cell wall hydrolase -
  E3S77_RS14255 - 843765..843821 (-) 57 Protein_798 YSIRK-type signal peptide-containing protein -
  E3S77_RS04185 (E3S77_04185) sucD 844048..844956 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  E3S77_RS04190 (E3S77_04190) sucC 844978..846144 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  E3S77_RS04195 (E3S77_04195) - 846253..847020 (-) 768 WP_000176391.1 ribonuclease HII -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33558.00 Da        Isoelectric Point: 9.6077

>NTDB_id=416592 E3S77_RS04170 WP_047213389.1 841293..842165(-) (dprA) [Staphylococcus aureus strain UP_426]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYHLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=416592 E3S77_RS04170 WP_047213389.1 841293..842165(-) (dprA) [Staphylococcus aureus strain UP_426]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACCATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983

Multiple sequence alignment