Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NIT79A3_RS11700 Genome accession   NC_015731
Coordinates   2534969..2536384 (-) Length   471 a.a.
NCBI ID   WP_013966400.1    Uniprot ID   F8GEE2
Organism   Nitrosomonas sp. Is79A3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2529969..2541384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIT79A3_RS18805 (Nit79A3_2369) - 2530117..2530269 (-) 153 WP_156797073.1 hypothetical protein -
  NIT79A3_RS11675 (Nit79A3_2370) - 2530347..2532281 (-) 1935 WP_013966395.1 ATP-dependent DNA helicase -
  NIT79A3_RS11680 (Nit79A3_2371) - 2532534..2532836 (-) 303 WP_013966396.1 RnfH family protein -
  NIT79A3_RS11685 (Nit79A3_2372) - 2532833..2533270 (-) 438 WP_013966397.1 type II toxin-antitoxin system RatA family toxin -
  NIT79A3_RS11690 (Nit79A3_2373) smpB 2533361..2533804 (+) 444 WP_013966398.1 SsrA-binding protein SmpB -
  NIT79A3_RS11695 (Nit79A3_2374) - 2533865..2534878 (+) 1014 WP_013966399.1 COX15/CtaA family protein -
  NIT79A3_RS11700 (Nit79A3_2375) pilR 2534969..2536384 (-) 1416 WP_013966400.1 sigma-54 dependent transcriptional regulator Regulator
  NIT79A3_RS11705 (Nit79A3_2376) - 2536375..2537778 (-) 1404 WP_348225612.1 ATP-binding protein -
  NIT79A3_RS19535 (Nit79A3_2377) - 2538032..2538292 (-) 261 WP_013966402.1 PP0621 family protein -
  NIT79A3_RS11715 (Nit79A3_2378) ispB 2538736..2539704 (-) 969 WP_013966403.1 octaprenyl diphosphate synthase -
  NIT79A3_RS11720 (Nit79A3_2379) rplU 2539852..2540163 (+) 312 WP_013966404.1 50S ribosomal protein L21 -
  NIT79A3_RS11725 (Nit79A3_2380) rpmA 2540174..2540431 (+) 258 WP_013966405.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52459.62 Da        Isoelectric Point: 6.7444

>NTDB_id=41653 NIT79A3_RS11700 WP_013966400.1 2534969..2536384(-) (pilR) [Nitrosomonas sp. Is79A3]
MSIDIGSIVNPHRKTTVPNILIVDDEPDIIELLELTLARMGMEVFSAKCISDAKLLLQSRQFQLCLTDMRLPDGEGLDLV
KYIGQHCADLPVAVITAYGTAENAVAALKAGAFDYLPKPVSLKQLRDLVKSALSLPPIQTELASQTQSNQRVLLGESQPM
RQLRATIDKLSRSQASVYISGESGSGKELAARMIHERSARHKQAFVAVNCGAIPENLMESEFFGYKKGAFTGAEKEHDGF
FLTANGGTLFLDEVADLPLAMQVKLLRVIQEKQVRRIGDTQEKNIDVRIISATHKKLSDCVETGQFRQDLYYRLNVIELN
IPALREMREDIPLIAEAILAKICRESARPVCNLKKDALALLMNYGYPGNVRELENILERTLALCPDTQIGKEELQLPNKA
REIPQNADNLPIISADPGLPLQDFLDQLERDSIVKALDQSRYNRTKAAKILGITVRSLRYRMERLGLNEKS

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=41653 NIT79A3_RS11700 WP_013966400.1 2534969..2536384(-) (pilR) [Nitrosomonas sp. Is79A3]
ATGTCTATAGATATCGGATCAATTGTTAATCCACATAGAAAAACTACCGTTCCCAATATACTGATTGTGGACGATGAGCC
GGATATTATCGAGTTGCTCGAACTGACATTAGCACGTATGGGCATGGAAGTTTTCAGTGCAAAGTGTATCAGTGACGCCA
AGCTATTATTGCAATCACGTCAATTTCAGTTATGCCTCACGGACATGCGTTTACCTGATGGAGAAGGGTTAGATCTGGTT
AAATATATTGGGCAGCATTGCGCAGATTTGCCTGTTGCCGTGATAACAGCTTATGGTACTGCAGAAAATGCCGTCGCTGC
GCTTAAAGCCGGGGCTTTTGATTATTTACCGAAACCGGTTTCATTAAAGCAGTTGCGGGATTTAGTTAAATCAGCCCTAA
GCCTGCCGCCGATACAAACCGAATTGGCATCACAAACCCAATCGAATCAGCGCGTACTGTTGGGTGAATCCCAACCCATG
CGTCAGCTACGTGCAACCATAGACAAACTTTCCCGCAGTCAGGCTTCTGTTTATATCAGTGGTGAATCGGGAAGTGGAAA
GGAACTGGCAGCCAGAATGATTCATGAAAGAAGCGCTCGCCATAAACAAGCGTTTGTTGCTGTCAACTGTGGTGCTATCC
CTGAAAATTTGATGGAAAGTGAATTTTTTGGTTATAAAAAAGGTGCTTTCACCGGTGCAGAAAAAGAGCATGATGGATTT
TTCCTGACAGCAAATGGCGGTACGTTGTTTCTTGATGAAGTCGCTGATTTGCCATTGGCCATGCAAGTTAAGTTGCTTAG
GGTAATCCAGGAAAAACAAGTGAGAAGAATCGGTGATACGCAAGAAAAAAATATCGATGTGCGTATCATCAGCGCCACAC
ACAAGAAGCTTAGTGACTGTGTTGAGACCGGGCAATTCCGGCAGGATTTGTACTATCGTCTGAATGTAATCGAATTGAAC
ATACCTGCATTGCGTGAGATGCGCGAAGATATTCCGCTCATAGCAGAAGCAATTCTGGCAAAAATCTGCCGGGAATCCGC
ACGGCCCGTTTGTAATCTTAAGAAAGATGCCCTGGCATTGCTGATGAACTATGGTTATCCCGGAAATGTACGTGAGCTTG
AAAACATACTTGAACGGACATTGGCACTTTGCCCCGATACGCAGATTGGTAAAGAAGAGCTGCAATTACCCAATAAAGCC
AGAGAAATTCCACAAAATGCCGATAATTTGCCCATAATCAGTGCGGATCCAGGATTGCCGTTGCAGGATTTTCTTGATCA
GCTTGAAAGGGACTCTATTGTAAAAGCATTGGATCAGAGTCGATACAACCGAACAAAAGCAGCTAAAATATTGGGTATCA
CAGTCAGGTCGTTGCGCTATCGGATGGAACGATTGGGATTAAATGAAAAATCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-464)

Response regulator receiver domain (Response_reg)

(20-129)

Sigma-54 interaction domain (Sigma54_activat)

(153-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8GEE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.589

95.117

0.548
  pilR Acinetobacter baumannii strain A118

44.946

98.726

0.444

Multiple sequence alignment