Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3S88_RS08975 Genome accession   NZ_CP047792
Coordinates   1794135..1794530 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_794     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1789135..1799530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS08950 (E3S88_08950) thiE 1789542..1790183 (-) 642 WP_124779879.1 thiamine phosphate synthase -
  E3S88_RS08955 (E3S88_08955) thiM 1790185..1790976 (-) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  E3S88_RS08960 (E3S88_08960) thiD 1790960..1791790 (-) 831 WP_063652326.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E3S88_RS08965 (E3S88_08965) tenA 1791783..1792472 (-) 690 WP_124779877.1 thiaminase II -
  E3S88_RS08970 (E3S88_08970) sceD 1793052..1793747 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  E3S88_RS08975 (E3S88_08975) ssb 1794135..1794530 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E3S88_RS08980 (E3S88_08980) - 1794724..1795164 (+) 441 WP_000846746.1 YwpF-like family protein -
  E3S88_RS08985 (E3S88_08985) fabZ 1795221..1795661 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E3S88_RS08990 (E3S88_08990) murA 1795695..1796960 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E3S88_RS08995 (E3S88_08995) - 1797071..1797304 (-) 234 WP_000384523.1 DUF1146 family protein -
  E3S88_RS13910 - 1797456..1797528 (-) 73 Protein_1729 hypothetical protein -
  E3S88_RS09000 (E3S88_09000) - 1797916..1798320 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=416396 E3S88_RS08975 WP_000932694.1 1794135..1794530(-) (ssb) [Staphylococcus aureus strain UP_794]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=416396 E3S88_RS08975 WP_000932694.1 1794135..1794530(-) (ssb) [Staphylococcus aureus strain UP_794]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACACACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment