Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3S88_RS06160 Genome accession   NZ_CP047792
Coordinates   1267583..1268269 (-) Length   228 a.a.
NCBI ID   WP_124780591.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_794     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262583..1273269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS06140 (E3S88_06140) rpsT 1263497..1263748 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  E3S88_RS06145 (E3S88_06145) holA 1263793..1264767 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  E3S88_RS06150 (E3S88_06150) comEC 1264824..1267025 (-) 2202 WP_185648656.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3S88_RS06155 (E3S88_06155) - 1267030..1267491 (-) 462 WP_000439692.1 ComE operon protein 2 -
  E3S88_RS06160 (E3S88_06160) comEA 1267583..1268269 (-) 687 WP_124780591.1 ComEA family DNA-binding protein Machinery gene
  E3S88_RS06165 (E3S88_06165) - 1268309..1269025 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  E3S88_RS06170 (E3S88_06170) rsfS 1269028..1269381 (-) 354 WP_124780589.1 ribosome silencing factor -
  E3S88_RS06175 (E3S88_06175) yqeK 1269382..1269966 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3S88_RS06180 (E3S88_06180) nadD 1269956..1270525 (-) 570 WP_000725157.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3S88_RS06185 (E3S88_06185) yhbY 1270528..1270818 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  E3S88_RS06190 (E3S88_06190) aroE 1270822..1271628 (-) 807 WP_103143830.1 shikimate dehydrogenase -
  E3S88_RS06195 (E3S88_06195) yqeH 1271642..1272742 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25710.45 Da        Isoelectric Point: 9.7956

>NTDB_id=416384 E3S88_RS06160 WP_124780591.1 1267583..1268269(-) (comEA) [Staphylococcus aureus strain UP_794]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDGYSSRNFEDKDTALKQSTSENSSLPKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNPNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=416384 E3S88_RS06160 WP_124780591.1 1267583..1268269(-) (comEA) [Staphylococcus aureus strain UP_794]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGGTTATTCTTCAAGAAATTTTGAAGATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGCCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACCCAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.476

99.561

0.961
  comEA Staphylococcus aureus MW2

95.595

99.561

0.952

Multiple sequence alignment