Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3S88_RS01150 Genome accession   NZ_CP047792
Coordinates   227450..228019 (+) Length   189 a.a.
NCBI ID   WP_124781428.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_794     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 222450..233019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS01125 (E3S88_01125) cysE 223663..224310 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  E3S88_RS01130 (E3S88_01130) cysS 224294..225694 (+) 1401 WP_117216762.1 cysteine--tRNA ligase -
  E3S88_RS01135 (E3S88_01135) - 225687..226091 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3S88_RS01140 (E3S88_01140) rlmB 226099..226845 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3S88_RS01145 (E3S88_01145) - 226845..227369 (+) 525 WP_000664738.1 NYN domain-containing protein -
  E3S88_RS01150 (E3S88_01150) sigH 227450..228019 (+) 570 WP_124781428.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3S88_RS01155 (E3S88_01155) rpmG 228134..228277 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3S88_RS01160 (E3S88_01160) secE 228333..228515 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3S88_RS01165 (E3S88_01165) nusG 228528..229076 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3S88_RS01170 (E3S88_01170) rplK 229257..229679 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3S88_RS01175 (E3S88_01175) rplA 229887..230579 (+) 693 WP_124781427.1 50S ribosomal protein L1 -
  E3S88_RS01185 (E3S88_01185) rplJ 230851..231351 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3S88_RS01190 (E3S88_01190) rplL 231394..231762 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3S88_RS01195 (E3S88_01195) - 231937..232545 (+) 609 WP_124781426.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=416362 E3S88_RS01150 WP_124781428.1 227450..228019(+) (sigH) [Staphylococcus aureus strain UP_794]
MKYDLTTQDSTLKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=416362 E3S88_RS01150 WP_124781428.1 227450..228019(+) (sigH) [Staphylococcus aureus strain UP_794]
TTGAAATATGATTTGACAACTCAAGACAGTACACTCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment