Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E3S90_RS03980 Genome accession   NZ_CP047790
Coordinates   796237..797109 (-) Length   290 a.a.
NCBI ID   WP_160195006.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_830     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 791237..802109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S90_RS03970 (E3S90_03970) trmFO 792525..793832 (-) 1308 WP_000195258.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  E3S90_RS03975 (E3S90_03975) topA 793988..796063 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  E3S90_RS03980 (E3S90_03980) dprA 796237..797109 (-) 873 WP_160195006.1 DNA-processing protein DprA Machinery gene
  E3S90_RS03985 (E3S90_03985) fmhC 797282..798526 (-) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  E3S90_RS03990 (E3S90_03990) - 798554..799672 (-) 1119 WP_001041669.1 LysM peptidoglycan-binding domain-containing protein -
  E3S90_RS03995 (E3S90_03995) sucD 799899..800807 (-) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  E3S90_RS04000 (E3S90_04000) sucC 800829..801995 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33579.02 Da        Isoelectric Point: 9.5094

>NTDB_id=416296 E3S90_RS03980 WP_160195006.1 796237..797109(-) (dprA) [Staphylococcus aureus strain UP_830]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGILITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=416296 E3S90_RS03980 WP_160195006.1 796237..797109(-) (dprA) [Staphylococcus aureus strain UP_830]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGATTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993

Multiple sequence alignment