Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3S93_RS07645 Genome accession   NZ_CP047789
Coordinates   1511531..1512100 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_967     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506531..1517100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S93_RS07600 (E3S93_07600) - 1507005..1507613 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  E3S93_RS07605 (E3S93_07605) rplL 1507788..1508156 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3S93_RS07610 (E3S93_07610) rplJ 1508199..1508699 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3S93_RS07620 (E3S93_07620) rplA 1508971..1509663 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3S93_RS07625 (E3S93_07625) rplK 1509871..1510293 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3S93_RS07630 (E3S93_07630) nusG 1510474..1511022 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3S93_RS07635 (E3S93_07635) secE 1511035..1511217 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  E3S93_RS07640 (E3S93_07640) rpmG 1511273..1511416 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3S93_RS07645 (E3S93_07645) sigH 1511531..1512100 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3S93_RS07650 (E3S93_07650) - 1512181..1512705 (-) 525 WP_000664738.1 NYN domain-containing protein -
  E3S93_RS07655 (E3S93_07655) rlmB 1512705..1513451 (-) 747 WP_050958313.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3S93_RS07660 (E3S93_07660) - 1513459..1513863 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3S93_RS07665 (E3S93_07665) cysS 1513856..1515256 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  E3S93_RS07670 (E3S93_07670) cysE 1515240..1515887 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=416261 E3S93_RS07645 WP_000872873.1 1511531..1512100(-) (sigH) [Staphylococcus aureus strain UP_967]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=416261 E3S93_RS07645 WP_000872873.1 1511531..1512100(-) (sigH) [Staphylococcus aureus strain UP_967]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment