Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3S97_RS09860 Genome accession   NZ_CP047787
Coordinates   2033427..2033822 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2028427..2038822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S97_RS09835 (E3S97_09835) thiE 2029025..2029666 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  E3S97_RS09840 (E3S97_09840) thiM 2029668..2030459 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  E3S97_RS09845 (E3S97_09845) thiD 2030443..2031273 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E3S97_RS09850 (E3S97_09850) tenA 2031266..2031955 (-) 690 WP_000396063.1 thiaminase II -
  E3S97_RS09855 (E3S97_09855) sceD 2032343..2033038 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  E3S97_RS09860 (E3S97_09860) ssb 2033427..2033822 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E3S97_RS09865 (E3S97_09865) - 2034016..2034456 (+) 441 WP_000846751.1 YwpF-like family protein -
  E3S97_RS09870 (E3S97_09870) fabZ 2034512..2034952 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E3S97_RS09875 (E3S97_09875) murA 2034986..2036251 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E3S97_RS09880 (E3S97_09880) - 2036362..2036595 (-) 234 WP_000384523.1 DUF1146 family protein -
  E3S97_RS09890 (E3S97_09890) - 2037192..2037596 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=416186 E3S97_RS09860 WP_000932694.1 2033427..2033822(-) (ssb) [Staphylococcus aureus strain UP_1108]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=416186 E3S97_RS09860 WP_000932694.1 2033427..2033822(-) (ssb) [Staphylococcus aureus strain UP_1108]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment