Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S99_RS02615 Genome accession   NZ_CP047785
Coordinates   469359..469805 (+) Length   148 a.a.
NCBI ID   WP_160199701.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1186     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464359..474805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S99_RS02580 (E3S99_02580) - 464853..465056 (+) 204 WP_000087561.1 YqgQ family protein -
  E3S99_RS02585 (E3S99_02585) - 465053..466039 (+) 987 WP_000161307.1 ROK family glucokinase -
  E3S99_RS02590 (E3S99_02590) - 466039..466368 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S99_RS02595 (E3S99_02595) - 466365..466988 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  E3S99_RS02600 (E3S99_02600) comGA 467040..468014 (+) 975 Protein_482 competence type IV pilus ATPase ComGA -
  E3S99_RS02605 (E3S99_02605) comGB 467986..469056 (+) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S99_RS02610 (E3S99_02610) comGC 469070..469381 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S99_RS02615 (E3S99_02615) comGD 469359..469805 (+) 447 WP_160199701.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S99_RS02620 (E3S99_02620) comGE 469792..470091 (+) 300 WP_195758580.1 competence protein ComGE Machinery gene
  E3S99_RS02625 (E3S99_02625) comGF 470009..470506 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S99_RS02630 (E3S99_02630) - 470603..470749 (+) 147 WP_001789879.1 hypothetical protein -
  E3S99_RS02635 (E3S99_02635) - 470739..471263 (+) 525 WP_001015120.1 shikimate kinase -
  E3S99_RS02640 (E3S99_02640) gcvT 471422..472513 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S99_RS02645 (E3S99_02645) gcvPA 472533..473879 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17117.24 Da        Isoelectric Point: 10.2449

>NTDB_id=416082 E3S99_RS02615 WP_160199701.1 469359..469805(+) (comGD) [Staphylococcus aureus strain UP_1186]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYENL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=416082 E3S99_RS02615 WP_160199701.1 469359..469805(+) (comGD) [Staphylococcus aureus strain UP_1186]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAATCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment