Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3T00_RS09965 Genome accession   NZ_CP047784
Coordinates   2044649..2045044 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2039649..2050044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T00_RS09940 (E3T00_09940) thiE 2040111..2040752 (-) 642 WP_043044028.1 thiamine phosphate synthase -
  E3T00_RS09945 (E3T00_09945) thiM 2040754..2041545 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  E3T00_RS09950 (E3T00_09950) thiD 2041529..2042359 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E3T00_RS09955 (E3T00_09955) tenA 2042352..2043041 (-) 690 WP_000396067.1 thiaminase II -
  E3T00_RS09960 (E3T00_09960) sceD 2043565..2044260 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  E3T00_RS09965 (E3T00_09965) ssb 2044649..2045044 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E3T00_RS09970 (E3T00_09970) - 2045238..2045678 (+) 441 WP_000846746.1 YwpF-like family protein -
  E3T00_RS09975 (E3T00_09975) fabZ 2045736..2046176 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E3T00_RS09980 (E3T00_09980) murA 2046210..2047475 (-) 1266 WP_000358010.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E3T00_RS09985 (E3T00_09985) - 2047586..2047819 (-) 234 WP_000384524.1 DUF1146 family protein -
  E3T00_RS09990 (E3T00_09990) - 2047951..2048043 (-) 93 WP_031824610.1 hypothetical protein -
  E3T00_RS09995 (E3T00_09995) - 2048437..2048841 (-) 405 WP_154253188.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=416063 E3T00_RS09965 WP_000932694.1 2044649..2045044(-) (ssb) [Staphylococcus aureus strain UP_1209]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=416063 E3T00_RS09965 WP_000932694.1 2044649..2045044(-) (ssb) [Staphylococcus aureus strain UP_1209]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment