Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3T00_RS04480 Genome accession   NZ_CP047784
Coordinates   932167..933153 (+) Length   328 a.a.
NCBI ID   WP_043044629.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 927167..938153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T00_RS04455 (E3T00_04455) opp4B 927395..928357 (+) 963 WP_043044630.1 oligopeptide ABC transporter permease -
  E3T00_RS04460 (E3T00_04460) opp4C 928369..929235 (+) 867 WP_160198932.1 oligopeptide ABC transporter permease -
  E3T00_RS04465 (E3T00_04465) trpS 929277..930266 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  E3T00_RS04470 (E3T00_04470) spxA 930561..930956 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3T00_RS04475 (E3T00_04475) mecA 931327..932046 (+) 720 WP_160198933.1 adaptor protein MecA -
  E3T00_RS04480 (E3T00_04480) coiA 932167..933153 (+) 987 WP_043044629.1 competence protein CoiA Machinery gene
  E3T00_RS04485 (E3T00_04485) pepF 933201..935009 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  E3T00_RS04490 (E3T00_04490) yjbH 935469..936275 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  E3T00_RS04495 (E3T00_04495) - 936298..936663 (-) 366 WP_000214068.1 truncated hemoglobin YjbI -
  E3T00_RS04500 (E3T00_04500) - 936767..937360 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  E3T00_RS04505 (E3T00_04505) - 937546..937893 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38794.40 Da        Isoelectric Point: 9.5881

>NTDB_id=416038 E3T00_RS04480 WP_043044629.1 932167..933153(+) (coiA) [Staphylococcus aureus strain UP_1209]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=416038 E3T00_RS04480 WP_043044629.1 932167..933153(+) (coiA) [Staphylococcus aureus strain UP_1209]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982

Multiple sequence alignment