Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3T00_RS02525 Genome accession   NZ_CP047784
Coordinates   534801..535370 (+) Length   189 a.a.
NCBI ID   WP_043044723.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1209     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 529801..540370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T00_RS02500 (E3T00_02500) cysE 531014..531661 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  E3T00_RS02505 (E3T00_02505) cysS 531645..533045 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  E3T00_RS02510 (E3T00_02510) - 533038..533442 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3T00_RS02515 (E3T00_02515) rlmB 533450..534196 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3T00_RS02520 (E3T00_02520) - 534196..534720 (+) 525 WP_000664732.1 NYN domain-containing protein -
  E3T00_RS02525 (E3T00_02525) sigH 534801..535370 (+) 570 WP_043044723.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3T00_RS02530 (E3T00_02530) rpmG 535485..535628 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3T00_RS02535 (E3T00_02535) secE 535684..535866 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3T00_RS02540 (E3T00_02540) nusG 535879..536427 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3T00_RS02545 (E3T00_02545) rplK 536608..537030 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3T00_RS02550 (E3T00_02550) rplA 537238..537930 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3T00_RS02560 (E3T00_02560) rplJ 538202..538702 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3T00_RS02565 (E3T00_02565) rplL 538745..539113 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3T00_RS02570 (E3T00_02570) - 539288..539896 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.89 Da        Isoelectric Point: 9.5047

>NTDB_id=416033 E3T00_RS02525 WP_043044723.1 534801..535370(+) (sigH) [Staphylococcus aureus strain UP_1209]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVAYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=416033 E3T00_RS02525 WP_043044723.1 534801..535370(+) (sigH) [Staphylococcus aureus strain UP_1209]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTGCGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment