Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H7792_RS08665 Genome accession   NZ_CP060643
Coordinates   1775642..1776748 (+) Length   368 a.a.
NCBI ID   WP_111714017.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1770642..1781748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7792_RS08645 (H7792_08600) hasA 1771320..1772579 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  H7792_RS08650 (H7792_08605) hasB 1772615..1773823 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  H7792_RS08655 (H7792_08610) hasC 1774005..1774919 (+) 915 WP_111714016.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  H7792_RS08660 (H7792_08615) yaaA 1775227..1775640 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  H7792_RS08665 (H7792_08620) recF 1775642..1776748 (+) 1107 WP_111714017.1 DNA replication/repair protein RecF Machinery gene
  H7792_RS08670 (H7792_08625) - 1776805..1777668 (-) 864 WP_136284902.1 GRP family sugar transporter -
  H7792_RS08675 (H7792_08630) guaB 1777871..1779352 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  H7792_RS08680 (H7792_08635) trpS 1779630..1780652 (-) 1023 WP_032464641.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41824.79 Da        Isoelectric Point: 8.9503

>NTDB_id=416024 H7792_RS08665 WP_111714017.1 1775642..1776748(+) (recF) [Streptococcus pyogenes strain TSPY416]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDELAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPKGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=416024 H7792_RS08665 WP_111714017.1 1775642..1776748(+) (recF) [Streptococcus pyogenes strain TSPY416]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGGCCACATCGCGATGAATTAGCCTTTTA
CATTAACGGAATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAAAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

46.875

95.652

0.448