Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E3T03_RS07710 Genome accession   NZ_CP047783
Coordinates   1618017..1618703 (-) Length   228 a.a.
NCBI ID   WP_160190985.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1313     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613017..1623703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T03_RS07690 (E3T03_07690) rpsT 1613931..1614182 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  E3T03_RS07695 (E3T03_07695) holA 1614227..1615201 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  E3T03_RS07700 (E3T03_07700) comEC 1615258..1617459 (-) 2202 WP_000967503.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E3T03_RS07705 (E3T03_07705) - 1617464..1617925 (-) 462 WP_000439693.1 ComE operon protein 2 -
  E3T03_RS07710 (E3T03_07710) comEA 1618017..1618703 (-) 687 WP_160190985.1 ComEA family DNA-binding protein Machinery gene
  E3T03_RS07715 (E3T03_07715) - 1618743..1619459 (-) 717 WP_000942456.1 class I SAM-dependent DNA methyltransferase -
  E3T03_RS07720 (E3T03_07720) rsfS 1619462..1619815 (-) 354 WP_001088020.1 ribosome silencing factor -
  E3T03_RS07725 (E3T03_07725) yqeK 1619816..1620400 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E3T03_RS07730 (E3T03_07730) nadD 1620390..1620959 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E3T03_RS07735 (E3T03_07735) yhbY 1620962..1621252 (-) 291 WP_000955233.1 ribosome assembly RNA-binding protein YhbY -
  E3T03_RS07740 (E3T03_07740) aroE 1621256..1622062 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  E3T03_RS07745 (E3T03_07745) yqeH 1622076..1623176 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25819.48 Da        Isoelectric Point: 9.5275

>NTDB_id=416013 E3T03_RS07710 WP_160190985.1 1618017..1618703(-) (comEA) [Staphylococcus aureus strain UP_1313]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKDPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=416013 E3T03_RS07710 WP_160190985.1 1618017..1618703(-) (comEA) [Staphylococcus aureus strain UP_1313]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGATCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

98.238

99.561

0.978

Multiple sequence alignment