Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E3T16_RS07465 Genome accession   NZ_CP047777
Coordinates   1487092..1487661 (-) Length   189 a.a.
NCBI ID   WP_002955227.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1632     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1482092..1492661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T16_RS07420 (E3T16_07420) - 1482566..1483174 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  E3T16_RS07425 (E3T16_07425) rplL 1483349..1483717 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E3T16_RS07430 (E3T16_07430) rplJ 1483760..1484260 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  E3T16_RS07440 (E3T16_07440) rplA 1484532..1485224 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  E3T16_RS07445 (E3T16_07445) rplK 1485432..1485854 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  E3T16_RS07450 (E3T16_07450) nusG 1486035..1486583 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E3T16_RS07455 (E3T16_07455) secE 1486596..1486778 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E3T16_RS07460 (E3T16_07460) rpmG 1486834..1486977 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  E3T16_RS07465 (E3T16_07465) sigH 1487092..1487661 (-) 570 WP_002955227.1 sigma-70 family RNA polymerase sigma factor Regulator
  E3T16_RS07470 (E3T16_07470) - 1487742..1488266 (-) 525 WP_000664737.1 NYN domain-containing protein -
  E3T16_RS07475 (E3T16_07475) rlmB 1488266..1489012 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E3T16_RS07480 (E3T16_07480) - 1489020..1489424 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E3T16_RS07485 (E3T16_07485) cysS 1489417..1490817 (-) 1401 WP_000631969.1 cysteine--tRNA ligase -
  E3T16_RS07490 (E3T16_07490) cysE 1490801..1491448 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23058.98 Da        Isoelectric Point: 9.5259

>NTDB_id=415762 E3T16_RS07465 WP_002955227.1 1487092..1487661(-) (sigH) [Staphylococcus aureus strain UP_1632]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVEKNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=415762 E3T16_RS07465 WP_002955227.1 1487092..1487661(-) (sigH) [Staphylococcus aureus strain UP_1632]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAAAAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

97.354

100

0.974

Multiple sequence alignment