Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H7796_RS08300 Genome accession   NZ_CP060640
Coordinates   1724424..1725530 (+) Length   368 a.a.
NCBI ID   WP_011185108.1    Uniprot ID   Q5X9A5
Organism   Streptococcus pyogenes strain TSPY764     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719424..1730530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7796_RS08280 (H7796_08280) hasA 1720102..1721361 (+) 1260 WP_076639538.1 hyaluronan synthase HasA -
  H7796_RS08285 (H7796_08285) hasB 1721397..1722605 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  H7796_RS08290 (H7796_08290) hasC 1722787..1723701 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  H7796_RS08295 (H7796_08295) yaaA 1724009..1724422 (+) 414 WP_228631382.1 S4 domain-containing protein YaaA -
  H7796_RS08300 (H7796_08300) recF 1724424..1725530 (+) 1107 WP_011185108.1 DNA replication/repair protein RecF Machinery gene
  H7796_RS08305 (H7796_08305) - 1725586..1726449 (-) 864 WP_076639541.1 GRP family sugar transporter -
  H7796_RS08310 (H7796_08310) - 1726774..1727991 (-) 1218 WP_001291561.1 tyrosine-type recombinase/integrase -
  H7796_RS08315 (H7796_08315) - 1728073..1728276 (-) 204 WP_000814511.1 excisionase -
  H7796_RS08320 - 1728260..1728511 (+) 252 WP_001845478.1 hypothetical protein -
  H7796_RS08325 (H7796_08320) - 1728737..1728967 (-) 231 WP_000857133.1 helix-turn-helix domain-containing protein -
  H7796_RS08330 (H7796_08325) - 1728964..1729386 (-) 423 WP_228631383.1 sigma-70 family RNA polymerase sigma factor -
  H7796_RS08335 (H7796_08330) - 1729891..1730244 (+) 354 WP_001227347.1 helix-turn-helix transcriptional regulator -
  H7796_RS08340 (H7796_08335) - 1730304..1730471 (-) 168 WP_000336323.1 cysteine-rich KTR domain-containing protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41795.71 Da        Isoelectric Point: 7.8294

>NTDB_id=415740 H7796_RS08300 WP_011185108.1 1724424..1725530(+) (recF) [Streptococcus pyogenes strain TSPY764]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=415740 H7796_RS08300 WP_011185108.1 1724424..1725530(+) (recF) [Streptococcus pyogenes strain TSPY764]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCCCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X9A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465