Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   H7796_RS06420 Genome accession   NZ_CP060640
Coordinates   1316717..1317751 (-) Length   344 a.a.
NCBI ID   WP_228631287.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY764     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311717..1322751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7796_RS06385 (H7796_06400) - 1312493..1312795 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  H7796_RS06390 (H7796_06405) rnpM 1312788..1313084 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  H7796_RS06395 (H7796_06410) nusA 1313100..1314257 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  H7796_RS06400 (H7796_06415) rimP 1314432..1314968 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  H7796_RS06410 (H7796_06425) trmB 1315227..1315862 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H7796_RS06415 (H7796_06430) ccrZ 1315862..1316653 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  H7796_RS06420 (H7796_06435) pptB 1316717..1317751 (-) 1035 WP_228631287.1 ABC transporter permease Regulator
  H7796_RS06425 (H7796_06440) pptA 1317754..1318479 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  H7796_RS06430 (H7796_06445) - 1318551..1318970 (+) 420 WP_002983376.1 HIT family protein -
  H7796_RS06435 (H7796_06450) - 1318967..1319323 (+) 357 WP_020905404.1 hypothetical protein -
  H7796_RS06440 (H7796_06455) brpA 1319434..1320708 (-) 1275 WP_020837594.1 biofilm formation/cell division transcriptional regulator BrpA -
  H7796_RS06445 (H7796_06460) - 1320717..1321241 (-) 525 WP_020905405.1 GNAT family N-acetyltransferase -
  H7796_RS06450 (H7796_06465) tsaE 1321216..1321677 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40351.56 Da        Isoelectric Point: 10.3713

>NTDB_id=415718 H7796_RS06420 WP_228631287.1 1316717..1317751(-) (pptB) [Streptococcus pyogenes strain TSPY764]
MKALFLKRRQDFQKHQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTFQTAVLLFLYPIFRRLGLSLFIFIILVFILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=415718 H7796_RS06420 WP_228631287.1 1316717..1317751(-) (pptB) [Streptococcus pyogenes strain TSPY764]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACACCAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTTCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTTATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427