Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H7798_RS09135 Genome accession   NZ_CP060638
Coordinates   1862512..1863618 (+) Length   368 a.a.
NCBI ID   WP_011185108.1    Uniprot ID   Q5X9A5
Organism   Streptococcus pyogenes strain TSPY141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857512..1868618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7798_RS09115 (H7798_09135) hasA 1858183..1859442 (+) 1260 WP_030126164.1 hyaluronan synthase HasA -
  H7798_RS09120 (H7798_09140) hasB 1859478..1860693 (+) 1216 Protein_1769 UDP-glucose 6-dehydrogenase HasB -
  H7798_RS09125 (H7798_09145) hasC 1860875..1861789 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  H7798_RS09130 (H7798_09150) yaaA 1862097..1862510 (+) 414 WP_030126163.1 S4 domain-containing protein YaaA -
  H7798_RS09135 (H7798_09155) recF 1862512..1863618 (+) 1107 WP_011185108.1 DNA replication/repair protein RecF Machinery gene
  H7798_RS09140 (H7798_09160) - 1863673..1864536 (-) 864 WP_002992310.1 GRP family sugar transporter -
  H7798_RS09145 (H7798_09165) guaB 1864739..1866220 (-) 1482 WP_030126162.1 IMP dehydrogenase -
  H7798_RS09150 (H7798_09170) trpS 1866498..1867520 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41795.71 Da        Isoelectric Point: 7.8294

>NTDB_id=415551 H7798_RS09135 WP_011185108.1 1862512..1863618(+) (recF) [Streptococcus pyogenes strain TSPY141]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=415551 H7798_RS09135 WP_011185108.1 1862512..1863618(+) (recF) [Streptococcus pyogenes strain TSPY141]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X9A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465

Multiple sequence alignment