Detailed information NTG0415466

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GVI47_RS23605
• Genome accession: NZ_CP047698
• Coordinates: 5040669..5042006 (+)
• Length: 445 a.a.
• NCBI ID: WP_043255030.1
• Uniprot ID: A0A024HNN1
• Organism: Pseudomonas knackmussii strain N1-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	5042117..5052228	5040669..5042006	flank	111

Gene organization within MGE regions

Location: 5040669..5052228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GVI47_RS23605	pilR	5040669..5042006 (+)	1338	WP_043255030.1	sigma-54 dependent transcriptional regulator	Regulator
GVI47_RS23610	thiO	5042117..5043226 (-)	1110	WP_160288309.1	glycine oxidase ThiO	-
GVI47_RS23615	-	5043404..5043916 (+)	513	WP_160288310.1	GspH/FimT family pseudopilin	-
GVI47_RS23620	-	5044068..5044589 (+)	522	WP_160288998.1	GspH/FimT family pseudopilin	-
GVI47_RS23625	pilV	5044600..5045169 (+)	570	WP_160288311.1	type IV pilus modification protein PilV	-
GVI47_RS23630	-	5045166..5045963 (+)	798	WP_160288312.1	PilW family protein	-
GVI47_RS23635	-	5045971..5046456 (+)	486	WP_160288313.1	PilX N-terminal domain-containing pilus assembly protein	-
GVI47_RS23640	-	5046465..5046812 (+)	348	WP_160288314.1	hypothetical protein	-
GVI47_RS23645	-	5046812..5050972 (+)	4161	WP_160288315.1	PilC/PilY family type IV pilus protein	-
GVI47_RS23650	-	5050972..5051409 (+)	438	WP_160288316.1	type IV pilin protein	-
GVI47_RS28940	-	5051495..5051743 (+)	249	WP_408004203.1	transposase	-
GVI47_RS28945	-	5051785..5052228 (+)	444	Protein_4709	transposase	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49621.83 Da
• Isoelectric Point: 5.8207

>NTDB_id=415466 GVI47_RS23605 WP_043255030.1 5040669..5042006(+) (pilR) [Pseudomonas knackmussii strain N1-2]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNIKEAREYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFVTKPVDLGRLRELVATALRLRSPSAEEAPVDNRLLGESPPMKQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVSVDVRVLSATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTDRV
LQRLASDSGLAPAKVSADALEKLKSYRFPGNVRELENMLERAYTLCEDDLIQPHDLRFAETASGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1338 bp

>NTDB_id=415466 GVI47_RS23605 WP_043255030.1 5040669..5042006(+) (pilR) [Pseudomonas knackmussii strain N1-2]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTCGATACCCGCAGCGCCCGCAACATCAAGGAGGCGCGCGAGTACCTGGCTCGTGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCGTCACCAAACCGGTCGA
CCTCGGTCGCCTGCGCGAACTGGTGGCCACCGCCCTGCGCCTGCGCTCACCGAGCGCCGAAGAGGCGCCTGTGGACAACC
GTCTGCTCGGCGAATCGCCGCCGATGAAGCAGATGCGCAACCAGATCGCCAAGCTCGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTGGTGGCACGCCTGATCCACGAACAGGGTCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTCAACTGCGGCGCCATCCCTTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCGGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAGGCCGTACGCGCGGTCGGTGGCCAACAGGAAGTGTCGGT
CGACGTGCGCGTGCTCAGCGCGACACACAAGGACCTCGCTGCAGAAGTCGCCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGATATTCCGCTGCTCACCGATCGCGTG
CTGCAGCGCCTGGCCAGCGATAGCGGCCTGGCGCCGGCGAAGGTCAGCGCCGATGCGCTGGAAAAGCTGAAGAGCTATCG
CTTCCCCGGCAACGTACGCGAGTTGGAGAACATGCTCGAGCGCGCCTACACACTGTGCGAGGACGACCTCATCCAGCCGC
ACGACCTGCGCTTCGCGGAAACCGCGAGTGGCGGCGAAAGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAAGAC
TACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAAACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACCTTCCGCTCCATGCGCTACCGGCTGAAGAAGCTCGGTATCGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Response regulator receiver domain (Response_reg) (7-115)

3D structure

• AlphaFold DB: A0A024HNN1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	87.64	100	0.876
pilR	Acinetobacter baumannii strain A118	50.109	100	0.517