Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GVI47_RS23600 Genome accession   NZ_CP047698
Coordinates   5039063..5040652 (+) Length   529 a.a.
NCBI ID   WP_160288308.1    Uniprot ID   -
Organism   Pseudomonas knackmussii strain N1-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5034063..5045652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI47_RS23580 pgeF 5035849..5036577 (-) 729 WP_160288306.1 peptidoglycan editing factor PgeF -
  GVI47_RS23585 rluD 5036574..5037533 (-) 960 WP_043255025.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GVI47_RS23590 - 5037681..5038697 (+) 1017 WP_043255027.1 outer membrane protein assembly factor BamD -
  GVI47_RS23595 - 5038840..5039070 (+) 231 WP_160288307.1 PP0621 family protein -
  GVI47_RS23600 pilS 5039063..5040652 (+) 1590 WP_160288308.1 PAS domain-containing sensor histidine kinase Regulator
  GVI47_RS23605 pilR 5040669..5042006 (+) 1338 WP_043255030.1 sigma-54 dependent transcriptional regulator Regulator
  GVI47_RS23610 thiO 5042117..5043226 (-) 1110 WP_160288309.1 glycine oxidase ThiO -
  GVI47_RS23615 - 5043404..5043916 (+) 513 WP_160288310.1 GspH/FimT family pseudopilin -
  GVI47_RS23620 - 5044068..5044589 (+) 522 WP_160288998.1 GspH/FimT family pseudopilin -
  GVI47_RS23625 pilV 5044600..5045169 (+) 570 WP_160288311.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58374.45 Da        Isoelectric Point: 6.9152

>NTDB_id=415465 GVI47_RS23600 WP_160288308.1 5039063..5040652(+) (pilS) [Pseudomonas knackmussii strain N1-2]
MARAIPLSGQQGQRILRLYHLYRLSIGLALVLLISSNLDNHILAPRDIELFHIGCWGYLIINILIAVLMPSPRQLLPIFC
IALLDILLLCGLFFAAGGVPSGVGNLLVVAVAIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPSAVNHYLQVGGLGA
LCFAAALLLQGLTRRQQLSDSLAEERATTVANLQELNAQILQRMRTGILVLDSQQRILLANQSAHSLLAESELAARRLAT
YSQDLLDSLQQWSQNPSLRPPSIQAPDSGPTLQPSFIPLRHGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLLESEALDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQSLDLKYWLQRFSAELCESLRPDQ
QIHVQLGEGSIQTRMDPNQLTQVLGNLVQNGLRYSAKQHGKGQVWLNLFRDSDSDLPVLEVLDDGPGIAEEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGCFRITFAHPLKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=415465 GVI47_RS23600 WP_160288308.1 5039063..5040652(+) (pilS) [Pseudomonas knackmussii strain N1-2]
ATGGCTAGGGCCATCCCGCTCAGCGGCCAGCAGGGGCAGCGCATCCTTCGTCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGGCGCTGGTGCTGCTGATTTCCAGCAACCTCGACAACCACATCCTCGCGCCCCGCGACATCGAGCTATTCCACATCG
GCTGCTGGGGCTACCTGATCATCAATATCCTGATCGCCGTGCTGATGCCGTCGCCGCGCCAGCTGCTGCCGATCTTCTGC
ATCGCCCTGCTCGACATTCTCCTGCTCTGCGGCCTGTTCTTCGCCGCCGGCGGGGTGCCTAGCGGGGTCGGCAACCTGCT
GGTGGTGGCCGTAGCTATCGCCAATATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCGGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTGAGCCTCAGCCAACCGTCGGCGGTCAACCATTACCTGCAGGTCGGCGGCCTGGGCGCC
CTGTGCTTCGCCGCCGCCTTGTTGCTGCAAGGCCTGACGCGCCGCCAGCAGCTCAGCGATTCGCTCGCCGAGGAGCGCGC
CACCACCGTGGCCAACCTGCAGGAACTCAACGCGCAGATCCTCCAGCGCATGCGTACCGGCATCCTGGTGCTCGACAGCC
AGCAGCGCATCCTGCTGGCCAACCAGAGTGCGCACAGCCTGCTGGCGGAGTCGGAACTCGCCGCGCGACGCCTCGCTACC
TACAGCCAGGACCTGCTCGACAGCCTGCAGCAATGGTCGCAGAACCCCTCGCTGCGCCCACCCAGCATCCAGGCCCCGGA
CAGCGGCCCCACGCTGCAGCCGAGCTTCATTCCGCTGCGCCATGGCGAAGAGCAGCACACCCTGGTCTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCACAACAACTCAAGCTTGCGGCGCTCGGCCGGCTAACTGCCGGGATCGCCCACGAAATC
CGCAATCCGCTGGGCGCAATCAGCCATGCCGCACAACTGCTGCTCGAGTCCGAAGCGCTGGACGCTCCCGACCGCAGGCT
GACGCAAATCATCCAGGACCAGTCGAGGCGCATGAACCTGGTGATCGAAAACGTCCTGCAACTCTCGCGGCGGCGCCAGG
CAGAGCCGCAATCGCTCGACCTCAAGTACTGGCTGCAGCGCTTCAGCGCCGAATTGTGCGAGAGCCTGCGACCGGACCAG
CAGATCCATGTGCAATTGGGCGAAGGCAGCATCCAGACGCGCATGGACCCGAACCAGCTCACGCAGGTGCTCGGCAATCT
GGTGCAGAATGGCCTGCGCTACAGCGCCAAGCAGCACGGCAAGGGCCAGGTGTGGCTGAATCTGTTCCGCGACAGCGACA
GCGACCTGCCCGTCCTCGAGGTGCTCGACGACGGTCCCGGCATAGCGGAGGAGCAGCTGGGCAAGCTGTTCGAGCCCTTC
TTCACTACCGAGAGCAAGGGGACCGGCCTCGGCCTGTACATTTCCAGGGAACTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAGGGCGGTGGCTGCTTCCGCATCACCTTCGCCCACCCGCTCAAGCAAAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

71.402

99.811

0.713

Multiple sequence alignment