Detailed information NTG0415423

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GVI48_RS07835
• Genome accession: NZ_CP047697
• Coordinates: 1694368..1695240 (-)
• Length: 290 a.a.
• NCBI ID: WP_023090843.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain RD1-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1689368..1700240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GVI48_RS07790	-	1690229..1690399 (-)	171	WP_003094672.1	DUF3094 family protein	-
GVI48_RS07795	-	1690425..1690874 (-)	450	WP_023084741.1	MOSC domain-containing protein	-
GVI48_RS07800	-	1690871..1691500 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
GVI48_RS07805	-	1691633..1692058 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
GVI48_RS07810	-	1692055..1692525 (+)	471	WP_019486073.1	hypothetical protein	-
GVI48_RS07815	-	1692522..1693211 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
GVI48_RS07820	-	1693317..1693526 (+)	210	WP_020750398.1	hypothetical protein	-
GVI48_RS07825	yacG	1693563..1693763 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
GVI48_RS07830	coaE	1693760..1694371 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
GVI48_RS07835	pilD	1694368..1695240 (-)	873	WP_023090843.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
GVI48_RS07840	pilC	1695241..1696458 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
GVI48_RS07845	pilB	1696462..1698162 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GVI48_RS07850	-	1698393..1698857 (+)	465	WP_023090842.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31869.92 Da
• Isoelectric Point: 7.7068

>NTDB_id=415423 GVI48_RS07835 WP_023090843.1 1694368..1695240(-) (pilD) [Pseudomonas aeruginosa strain RD1-3]
MTLLDYLASHPLAFVLCPILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=415423 GVI48_RS07835 WP_023090843.1 1694368..1695240(-) (pilD) [Pseudomonas aeruginosa strain RD1-3]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCCCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	50.19	90.69	0.455