Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HUG14_RS11870 Genome accession   NZ_CP060580
Coordinates   1564452..1565447 (+) Length   331 a.a.
NCBI ID   WP_371400349.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1559452..1570447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS07655 (HUG14_07655) rpsA 1560412..1561638 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  HUG14_RS07660 (HUG14_07660) - 1561789..1562504 (+) 716 Protein_1460 nucleoside phosphorylase -
  HUG14_RS07665 (HUG14_07665) pnuC 1562633..1563346 (+) 714 WP_012897492.1 nicotinamide riboside transporter PnuC -
  HUG14_RS11865 uvrC 1563441..1564403 (+) 963 Protein_1462 excinuclease ABC subunit UvrC -
  HUG14_RS11870 uvrC 1564452..1565447 (+) 996 WP_371400349.1 hypothetical protein Machinery gene
  HUG14_RS07675 (HUG14_07675) mutY 1565611..1566774 (+) 1164 WP_187398239.1 A/G-specific adenine glycosylase -
  HUG14_RS07680 (HUG14_07680) - 1567938..1568159 (-) 222 WP_058206162.1 hypothetical protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36971.73 Da        Isoelectric Point: 10.1706

>NTDB_id=415371 HUG14_RS11870 WP_371400349.1 1564452..1565447(+) (uvrC) [Lactococcus lactis strain K_LL005]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAGIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=415371 HUG14_RS11870 WP_371400349.1 1564452..1565447(+) (uvrC) [Lactococcus lactis strain K_LL005]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAACAGTCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAGTTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCAGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAGTCGTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCACGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGGGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGACC
CTTTAGATGTAGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
GCATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae D39

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae TIGR4

70.741

81.571

0.577