Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   HUG14_RS04040 Genome accession   NZ_CP060580
Coordinates   819928..820713 (-) Length   261 a.a.
NCBI ID   WP_021722894.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 814928..825713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS04015 (HUG14_04015) - 815529..816698 (+) 1170 WP_017863957.1 ring-cleaving dioxygenase -
  HUG14_RS04020 (HUG14_04020) - 816709..817299 (+) 591 WP_003132255.1 flavin reductase family protein -
  HUG14_RS04025 (HUG14_04025) rpmG 817378..817527 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  HUG14_RS04030 (HUG14_04030) rpmF 817557..817730 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  HUG14_RS04035 (HUG14_04035) - 818094..819875 (+) 1782 WP_109990575.1 heavy metal translocating P-type ATPase -
  HUG14_RS04040 (HUG14_04040) spo0J 819928..820713 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  HUG14_RS04045 (HUG14_04045) rarA 820768..822027 (-) 1260 WP_187398501.1 replication-associated recombination protein A Machinery gene
  HUG14_RS11825 (HUG14_04050) - 822071..822558 (-) 488 Protein_763 GNAT family N-acetyltransferase -
  HUG14_RS04055 (HUG14_04055) - 822710..823177 (+) 468 WP_010905112.1 DUF3013 family protein -
  HUG14_RS04060 (HUG14_04060) - 823207..824760 (+) 1554 WP_003132266.1 ABC-F family ATP-binding cassette domain-containing protein -
  HUG14_RS04065 (HUG14_04065) - 824891..825175 (+) 285 WP_010905114.1 hypothetical protein -
  HUG14_RS04070 (HUG14_04070) - 825213..825701 (+) 489 WP_033900273.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29755.63 Da        Isoelectric Point: 9.5731

>NTDB_id=415333 HUG14_RS04040 WP_021722894.1 819928..820713(-) (spo0J) [Lactococcus lactis strain K_LL005]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=415333 HUG14_RS04040 WP_021722894.1 819928..820713(-) (spo0J) [Lactococcus lactis strain K_LL005]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATCAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471