Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HUG14_RS04045 | Genome accession | NZ_CP060580 |
| Coordinates | 820768..822027 (-) | Length | 419 a.a. |
| NCBI ID | WP_187398501.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain K_LL005 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 815768..827027
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUG14_RS04020 (HUG14_04020) | - | 816709..817299 (+) | 591 | WP_003132255.1 | flavin reductase family protein | - |
| HUG14_RS04025 (HUG14_04025) | rpmG | 817378..817527 (-) | 150 | WP_003132258.1 | 50S ribosomal protein L33 | - |
| HUG14_RS04030 (HUG14_04030) | rpmF | 817557..817730 (-) | 174 | WP_010905107.1 | 50S ribosomal protein L32 | - |
| HUG14_RS04035 (HUG14_04035) | - | 818094..819875 (+) | 1782 | WP_109990575.1 | heavy metal translocating P-type ATPase | - |
| HUG14_RS04040 (HUG14_04040) | spo0J | 819928..820713 (-) | 786 | WP_021722894.1 | ParB/RepB/Spo0J family partition protein | Regulator |
| HUG14_RS04045 (HUG14_04045) | rarA | 820768..822027 (-) | 1260 | WP_187398501.1 | replication-associated recombination protein A | Machinery gene |
| HUG14_RS11825 (HUG14_04050) | - | 822071..822558 (-) | 488 | Protein_763 | GNAT family N-acetyltransferase | - |
| HUG14_RS04055 (HUG14_04055) | - | 822710..823177 (+) | 468 | WP_010905112.1 | DUF3013 family protein | - |
| HUG14_RS04060 (HUG14_04060) | - | 823207..824760 (+) | 1554 | WP_003132266.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| HUG14_RS04065 (HUG14_04065) | - | 824891..825175 (+) | 285 | WP_010905114.1 | hypothetical protein | - |
| HUG14_RS04070 (HUG14_04070) | - | 825213..825701 (+) | 489 | WP_033900273.1 | YdeI/OmpD-associated family protein | - |
| HUG14_RS04075 (HUG14_04075) | prmA | 825719..826672 (+) | 954 | WP_012896947.1 | 50S ribosomal protein L11 methyltransferase | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 46780.15 Da Isoelectric Point: 6.0602
>NTDB_id=415334 HUG14_RS04045 WP_187398501.1 820768..822027(-) (rarA) [Lactococcus lactis strain K_LL005]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLKFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLKFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS
Nucleotide
Download Length: 1260 bp
>NTDB_id=415334 HUG14_RS04045 WP_187398501.1 820768..822027(-) (rarA) [Lactococcus lactis strain K_LL005]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCAAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAAAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACACCATGTCACTTTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGTGGAGATTTGCA
GAGTCTAGCCCGACGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCGGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTCCC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCAAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAAAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACACCATGTCACTTTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGTGGAGATTTGCA
GAGTCTAGCCCGACGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCGGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTCCC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.716 |
100 |
0.601 |