Detailed information NTG0415004

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GTK59_RS21930
• Genome accession: NZ_CP047649
• Coordinates: 4477865..4478665 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 158590
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4472865..4483665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTK59_RS21895	gspH	4473021..4473536 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
GTK59_RS21900	gspI	4473533..4473898 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
GTK59_RS21905	gspJ	4473895..4474491 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
GTK59_RS21910	gspK	4474488..4475474 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
GTK59_RS21915	gspL	4475461..4476654 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
GTK59_RS21920	-	4476647..4477132 (+)	486	WP_004151943.1	type II secretion system protein M	-
GTK59_RS21925	-	4477122..4477868 (+)	747	WP_004145897.1	type II secretion system protein N	-
GTK59_RS21930	pilD	4477865..4478665 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
GTK59_RS21935	hrpB	4478713..4481142 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
GTK59_RS21940	thpR	4481215..4481751 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
GTK59_RS21945	sfsA	4481751..4482467 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
GTK59_RS21950	dksA	4482630..4483085 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=415004 GTK59_RS21930 WP_002888947.1 4477865..4478665(+) (pilD) [Klebsiella pneumoniae strain 158590]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=415004 GTK59_RS21930 WP_002888947.1 4477865..4478665(+) (pilD) [Klebsiella pneumoniae strain 158590]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425