Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GTK58_RS10620 Genome accession   NZ_CP047648
Coordinates   2159552..2160148 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain 156070     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2154552..2165148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK58_RS10600 - 2154744..2156501 (-) 1758 WP_002898401.1 Lon protease family protein -
  GTK58_RS10605 matP 2156687..2157139 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  GTK58_RS10610 ompA 2157271..2158341 (-) 1071 WP_062954987.1 porin OmpA -
  GTK58_RS10615 sulA 2158694..2159203 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  GTK58_RS10620 sxy/tfoX 2159552..2160148 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  GTK58_RS10625 yccS 2160162..2162297 (-) 2136 WP_002898422.1 YccS family putative transporter -
  GTK58_RS10630 - 2162315..2162761 (-) 447 WP_002898425.1 YccF domain-containing protein -
  GTK58_RS10635 helD 2162886..2164940 (+) 2055 WP_002898429.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=414975 GTK58_RS10620 WP_004150836.1 2159552..2160148(+) (sxy/tfoX) [Klebsiella pneumoniae strain 156070]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=414975 GTK58_RS10620 WP_004150836.1 2159552..2160148(+) (sxy/tfoX) [Klebsiella pneumoniae strain 156070]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment