Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | GNE05_RS12975 | Genome accession | NZ_CP047644 |
| Coordinates | 2652034..2653071 (-) | Length | 345 a.a. |
| NCBI ID | WP_014418377.1 | Uniprot ID | - |
| Organism | Bacillus sp. AM1(2019) | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2647034..2658071
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNE05_RS12925 (GNE05_12925) | - | 2647267..2648052 (-) | 786 | WP_007408329.1 | TasA family protein | - |
| GNE05_RS12930 (GNE05_12930) | - | 2648117..2648701 (-) | 585 | WP_022552967.1 | signal peptidase I | - |
| GNE05_RS12935 (GNE05_12935) | tapA | 2648673..2649344 (-) | 672 | WP_014418371.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GNE05_RS12940 (GNE05_12940) | - | 2649603..2649932 (+) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| GNE05_RS12945 (GNE05_12945) | - | 2649973..2650152 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| GNE05_RS12950 (GNE05_12950) | comGG | 2650209..2650586 (-) | 378 | WP_061862389.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GNE05_RS12955 (GNE05_12955) | comGF | 2650587..2650982 (-) | 396 | WP_061862390.1 | competence type IV pilus minor pilin ComGF | - |
| GNE05_RS12960 (GNE05_12960) | comGE | 2650996..2651310 (-) | 315 | WP_017418140.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GNE05_RS12965 (GNE05_12965) | comGD | 2651294..2651731 (-) | 438 | WP_095061019.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GNE05_RS12970 (GNE05_12970) | comGC | 2651721..2652029 (-) | 309 | WP_014418376.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GNE05_RS12975 (GNE05_12975) | comGB | 2652034..2653071 (-) | 1038 | WP_014418377.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GNE05_RS12980 (GNE05_12980) | comGA | 2653058..2654128 (-) | 1071 | WP_014418378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GNE05_RS12985 (GNE05_12985) | - | 2654321..2655271 (-) | 951 | WP_160182873.1 | magnesium transporter CorA family protein | - |
| GNE05_RS12990 (GNE05_12990) | - | 2655417..2656718 (+) | 1302 | WP_029973873.1 | hemolysin family protein | - |
| GNE05_RS12995 (GNE05_12995) | - | 2656756..2657586 (-) | 831 | WP_021494316.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39600.91 Da Isoelectric Point: 9.6787
>NTDB_id=414882 GNE05_RS12975 WP_014418377.1 2652034..2653071(-) (comGB) [Bacillus sp. AM1(2019)]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=414882 GNE05_RS12975 WP_014418377.1 2652034..2653071(-) (comGB) [Bacillus sp. AM1(2019)]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GACGGTTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GACGGTTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
66.254 |
93.623 |
0.62 |