Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GNE05_RS02315 Genome accession   NZ_CP047644
Coordinates   446278..447231 (+) Length   317 a.a.
NCBI ID   WP_014416904.1    Uniprot ID   -
Organism   Bacillus sp. AM1(2019)     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441278..452231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS02290 (GNE05_02290) - 441324..442751 (+) 1428 WP_100261600.1 HAMP domain-containing sensor histidine kinase -
  GNE05_RS02295 (GNE05_02295) rapC 442909..444057 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  GNE05_RS02300 (GNE05_02300) phrC 444041..444160 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  GNE05_RS02305 (GNE05_02305) - 444311..444406 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  GNE05_RS02310 (GNE05_02310) - 444501..445865 (-) 1365 WP_045508518.1 aspartate kinase -
  GNE05_RS02315 (GNE05_02315) ceuB 446278..447231 (+) 954 WP_014416904.1 ABC transporter permease Machinery gene
  GNE05_RS02320 (GNE05_02320) - 447221..448168 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  GNE05_RS02325 (GNE05_02325) - 448162..448920 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  GNE05_RS02330 (GNE05_02330) - 448942..449886 (+) 945 WP_012116805.1 siderophore ABC transporter substrate-binding protein -
  GNE05_RS02335 (GNE05_02335) - 449928..451352 (-) 1425 WP_017419270.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=414847 GNE05_RS02315 WP_014416904.1 446278..447231(+) (ceuB) [Bacillus sp. AM1(2019)]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=414847 GNE05_RS02315 WP_014416904.1 446278..447231(+) (ceuB) [Bacillus sp. AM1(2019)]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTTTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTGCTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539

Multiple sequence alignment