Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   GNE05_RS02110 Genome accession   NZ_CP047644
Coordinates   384665..385063 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus sp. AM1(2019)     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 379665..390063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS02085 (GNE05_02085) - 379837..381039 (+) 1203 WP_160182374.1 GTP-binding protein -
  GNE05_RS02090 (GNE05_02090) - 381104..382240 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  GNE05_RS02095 (GNE05_02095) - 382255..382689 (+) 435 WP_160182375.1 RDD family protein -
  GNE05_RS02100 (GNE05_02100) - 382761..383084 (+) 324 WP_007409357.1 YckD family protein -
  GNE05_RS02105 (GNE05_02105) - 383188..384624 (+) 1437 WP_160182376.1 family 1 glycosylhydrolase -
  GNE05_RS02110 (GNE05_02110) nin/comJ 384665..385063 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  GNE05_RS02115 (GNE05_02115) nucA/comI 385084..385521 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GNE05_RS02120 (GNE05_02120) hxlB 385852..386409 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  GNE05_RS02125 (GNE05_02125) hxlA 386406..387041 (-) 636 WP_160182377.1 3-hexulose-6-phosphate synthase -
  GNE05_RS02130 (GNE05_02130) - 387273..387635 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=414843 GNE05_RS02110 WP_014416873.1 384665..385063(-) (nin/comJ) [Bacillus sp. AM1(2019)]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=414843 GNE05_RS02110 WP_014416873.1 384665..385063(-) (nin/comJ) [Bacillus sp. AM1(2019)]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment